BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025350
         (1433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW74566.1| integrase [Boechera divaricarpa]                       281   2e-90
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   276   1e-85
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   276   7e-85
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   273   4e-84
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         271   1e-83

>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  281 bits (720), Expect(3) = 2e-90
 Identities = 143/264 (54%), Positives = 190/264 (71%), Gaps = 6/264 (2%)
 Frame = +3

Query: 177  KLNEEVYVEQPQGYVKKGQEDKVYRLSKAL*GTKQAPRAWNNKIDSIFGKMAFKQVKVSH 356
            +L EEVYV+QP+G++ +G+E  VYRL KAL G KQAPRAW NKIDS F +  F++ K S 
Sbjct: 767  ELREEVYVDQPEGFIVEGREGFVYRLYKALYGLKQAPRAWYNKIDSYFAETGFERSK-SE 825

Query: 357  P--YVKKKQGRVFLIVCLYVDDLIYTGTNRKMVQEFKNARMKEYEMSDLGLMKYFLGVKV 530
            P  Y+KK+     L+VCLYVDD+IY G++  +V EFK + M+++EM+DLGL+ +FLG++V
Sbjct: 826  PTLYIKKQGAGDILVVCLYVDDMIYMGSSASLVSEFKASMMEKFEMTDLGLLYFFLGLEV 885

Query: 531  RQSEGEIFISQEKYISDMLNKFNMANCKPISTPLVMNEKLQLYDGAPRT----CQSLVGS 698
            +Q E  +F+SQ KY  D+L +F+MA C  + TP+ +NEKL   DG  +      +SLVG 
Sbjct: 886  KQVEDGVFVSQHKYACDLLKRFDMAGCNAVETPMNVNEKLLAGDGTEKADATKFRSLVGG 945

Query: 699  LIHLTNTRPNIVHLVSFLSRFMHNPSKLHFAAAKRILRYLQGTKNFGLIYVKEEDNKLVG 878
            LI+LT+TRP+I   VS +SRFMH P+K HF AAKR+LRY+  T  +GL Y      KLVG
Sbjct: 946  LIYLTHTRPDICFAVSAISRFMHGPTKQHFGAAKRLLRYIARTAEYGLWYCSVSKFKLVG 1005

Query: 879  FTNSDWAGSLDDRKSTSGHVFCLG 950
            FT+SDWAG + DRKSTSGHVF LG
Sbjct: 1006 FTDSDWAGCVQDRKSTSGHVFNLG 1029



 Score = 53.1 bits (126), Expect(3) = 2e-90
 Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
 Frame = +2

Query: 968  C*RSRRQ--IALSSAEAEYIASRDAACEAVWLRRILSYMQQKQDNPTIFHC 1114
            C  S++Q   ALSS+EAEY A+  AAC+AVWLRRIL+ ++Q+Q+  T   C
Sbjct: 1034 CWSSKKQNVTALSSSEAEYTAATAAACQAVWLRRILADIKQEQEKATTIFC 1084



 Score = 47.4 bits (111), Expect(3) = 2e-90
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +1

Query: 1135 VTLRHHFIRALVKNGEVKMEYVNRNDLFAYIFTKAVSVEKFSYFRNCL 1278
            ++++ HFIR LV  G V +EY + N+  A + TKA+S  KF YFR+ L
Sbjct: 1105 ISIKVHFIRDLVSEGSVTLEYCSTNEQSADVLTKALSRNKFDYFRSKL 1152


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  276 bits (706), Expect(3) = 1e-85
 Identities = 153/350 (43%), Positives = 206/350 (58%), Gaps = 24/350 (6%)
 Frame = +3

Query: 180  LNEEVYVEQPQGYVKKGQEDKVYRLSKAL*GTKQAPRAWNNKIDSIFGKMAFKQVKVSHP 359
            L EEVY+EQPQGY+ KG+EDKV RL KAL G KQAPRAWN +ID  F +  F +    H 
Sbjct: 924  LEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHA 983

Query: 360  YVKKKQGRVFLIVCLYVDDLIYTGTNRKMVQEFKNARMKEYEMSDLGLMKYFLGVKVRQS 539
               K Q    LI CLYVDDLI+TG N  M +EFK    KE+EM+D+GLM Y+LG++V+Q 
Sbjct: 984  LYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE 1043

Query: 540  EGEIFISQEKYISDMLNKFNMANCKPISTPLVMNEKLQLYDGA----PRTCQSLVGSLIH 707
            +  IFI+QE Y  ++L KF M +  P+ TP+    KL   +      P T +SLVGSL +
Sbjct: 1044 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1103

Query: 708  LTNTRPNIVHLVSFLSRFMHNPSKLHFAAAKRILRYLQGTKNFGLIYVKEEDNKLVGFTN 887
            LT TRP+I++ V  +SR+M +P+  HF AAKRILRY++GT NFGL Y    D KLVG+++
Sbjct: 1104 LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSD 1163

Query: 888  SDWAGSLDDRKSTSGHVFCLG-----------------*CDFLVVKEAEDKLHCLRQKRS 1016
            SDW G +DDRKSTSG VF +G                  C+   V       H +  +  
Sbjct: 1164 SDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNL 1223

Query: 1017 TLQVEM---QLVKQFG*GEYSLTCSKNKTIQQFFIVVFHSRSRHVKASFH 1157
              ++ +   +  K F   + ++  +KN         VFH RS+H+   +H
Sbjct: 1224 LKELSLPQEEPTKIFVDNKSAIALAKNP--------VFHDRSKHIDTRYH 1265



 Score = 50.8 bits (120), Expect(3) = 1e-85
 Identities = 24/61 (39%), Positives = 37/61 (60%)
 Frame = +2

Query: 2    KHKAHLVAKGYS*QPSIDFTETFAAVVCMQTIRTVXXXXXXXXXXVFHLDVKSTFLSEEI 181
            ++KA LVAKGYS +  ID+ E FA V  ++T+R +          +  +DVKS FL+ ++
Sbjct: 865  RYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDL 924

Query: 182  E 184
            E
Sbjct: 925  E 925



 Score = 38.9 bits (89), Expect(3) = 1e-85
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 1135 VTLRHHFIRALVKNGEVKMEYVNRNDLFAYIFTKAVSVEKFSYFRNCL 1278
            +  R+H+IR  V   +V++EYV  +D  A IFTK +  E F   R+ L
Sbjct: 1260 IDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLL 1307


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  276 bits (706), Expect(3) = 7e-85
 Identities = 153/350 (43%), Positives = 206/350 (58%), Gaps = 24/350 (6%)
 Frame = +3

Query: 180  LNEEVYVEQPQGYVKKGQEDKVYRLSKAL*GTKQAPRAWNNKIDSIFGKMAFKQVKVSHP 359
            L EEVY+EQPQGY+ KG+EDKV RL KAL G KQAPRAWN +ID  F +  F +    H 
Sbjct: 956  LEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHA 1015

Query: 360  YVKKKQGRVFLIVCLYVDDLIYTGTNRKMVQEFKNARMKEYEMSDLGLMKYFLGVKVRQS 539
               K Q    LI CLYVDDLI+TG N  M +EFK    KE+EM+D+GLM Y+LG++V+Q 
Sbjct: 1016 LYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE 1075

Query: 540  EGEIFISQEKYISDMLNKFNMANCKPISTPLVMNEKLQLYDGA----PRTCQSLVGSLIH 707
            +  IFI+QE Y  ++L KF M +  P+ TP+    KL   +      P T +SLVGSL +
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135

Query: 708  LTNTRPNIVHLVSFLSRFMHNPSKLHFAAAKRILRYLQGTKNFGLIYVKEEDNKLVGFTN 887
            LT TRP+I++ V  +SR+M +P+  HF AAKRILRY++GT NFGL Y    D KLVG+++
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSD 1195

Query: 888  SDWAGSLDDRKSTSGHVFCLG-----------------*CDFLVVKEAEDKLHCLRQKRS 1016
            SDW G +DDRKSTSG VF +G                  C+   V       H +  +  
Sbjct: 1196 SDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNL 1255

Query: 1017 TLQVEM---QLVKQFG*GEYSLTCSKNKTIQQFFIVVFHSRSRHVKASFH 1157
              ++ +   +  K F   + ++  +KN         VFH RS+H+   +H
Sbjct: 1256 LKELSLPQEEPTKIFVDNKSAIALAKNP--------VFHDRSKHIDTRYH 1297



 Score = 48.5 bits (114), Expect(3) = 7e-85
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +2

Query: 2    KHKAHLVAKGYS*QPSIDFTETFAAVVCMQTIRTVXXXXXXXXXXVFHLDVKSTFLSEEI 181
            ++KA LVAKGY  +  ID+ E FA V  ++T+R +          +  +DVKS FL+ ++
Sbjct: 897  RYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDL 956

Query: 182  E 184
            E
Sbjct: 957  E 957



 Score = 38.9 bits (89), Expect(3) = 7e-85
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 1135 VTLRHHFIRALVKNGEVKMEYVNRNDLFAYIFTKAVSVEKFSYFRNCL 1278
            +  R+H+IR  V   +V++EYV  +D  A IFTK +  E F   R+ L
Sbjct: 1292 IDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLL 1339


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  273 bits (698), Expect(3) = 4e-84
 Identities = 151/350 (43%), Positives = 205/350 (58%), Gaps = 24/350 (6%)
 Frame = +3

Query: 180  LNEEVYVEQPQGYVKKGQEDKVYRLSKAL*GTKQAPRAWNNKIDSIFGKMAFKQVKVSHP 359
            L EEVY+EQPQGY+ KG+EDKV RL K L G KQAPRAWN +ID  F +  F +    H 
Sbjct: 956  LEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHA 1015

Query: 360  YVKKKQGRVFLIVCLYVDDLIYTGTNRKMVQEFKNARMKEYEMSDLGLMKYFLGVKVRQS 539
               K Q    LI CLYVDDLI+TG N  + +EFK    KE+EM+D+GLM Y+LG++V+Q 
Sbjct: 1016 LYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE 1075

Query: 540  EGEIFISQEKYISDMLNKFNMANCKPISTPLVMNEKLQLYDGA----PRTCQSLVGSLIH 707
            +  IFI+QE Y  ++L KF M +  P+ TP+    KL   +      P T +SLVGSL +
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135

Query: 708  LTNTRPNIVHLVSFLSRFMHNPSKLHFAAAKRILRYLQGTKNFGLIYVKEEDNKLVGFTN 887
            LT TRP+I++ V  +SR+M +P+  HF AAKRILRY++GT NFGL Y    D KLVG+++
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSD 1195

Query: 888  SDWAGSLDDRKSTSGHVFCLG-----------------*CDFLVVKEAEDKLHCLRQKRS 1016
            SDW G +DDRKSTSG VF +G                  C+   V       H +  +  
Sbjct: 1196 SDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNL 1255

Query: 1017 TLQVEM---QLVKQFG*GEYSLTCSKNKTIQQFFIVVFHSRSRHVKASFH 1157
              ++ +   +  K F   + ++  +KN         VFH RS+H+   +H
Sbjct: 1256 LKELSLPQEEPTKIFVDNKSAIALAKNP--------VFHDRSKHIDTRYH 1297



 Score = 50.4 bits (119), Expect(3) = 4e-84
 Identities = 24/61 (39%), Positives = 37/61 (60%)
 Frame = +2

Query: 2    KHKAHLVAKGYS*QPSIDFTETFAAVVCMQTIRTVXXXXXXXXXXVFHLDVKSTFLSEEI 181
            ++KA LVAKGYS +  ID+ E FA V  ++T+R +          +  +DVKS FL+ ++
Sbjct: 897  RYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDL 956

Query: 182  E 184
            E
Sbjct: 957  E 957



 Score = 37.7 bits (86), Expect(3) = 4e-84
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 1135 VTLRHHFIRALVKNGEVKMEYVNRNDLFAYIFTKAVSVEKFSYFRNCL 1278
            +  R+H+IR  V   +V++EYV  +D  A  FTK +  E F   R+ L
Sbjct: 1292 IDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLL 1339


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  271 bits (694), Expect(3) = 1e-83
 Identities = 150/350 (42%), Positives = 205/350 (58%), Gaps = 24/350 (6%)
 Frame = +3

Query: 180  LNEEVYVEQPQGYVKKGQEDKVYRLSKAL*GTKQAPRAWNNKIDSIFGKMAFKQVKVSHP 359
            L EEVY+EQPQGY+ KG+EDKV RL K L G KQAPRAWN +ID  F +  F +    H 
Sbjct: 956  LEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHA 1015

Query: 360  YVKKKQGRVFLIVCLYVDDLIYTGTNRKMVQEFKNARMKEYEMSDLGLMKYFLGVKVRQS 539
               K Q    LI CLYVDDLI+TG N  + +EFK    KE+EM+D+GLM Y+LG++V+Q 
Sbjct: 1016 LYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQE 1075

Query: 540  EGEIFISQEKYISDMLNKFNMANCKPISTPLVMNEKLQLYDGA----PRTCQSLVGSLIH 707
            +  IFI+QE Y  ++L KF + +  P+ TP+    KL   +      P T +SLVGSL +
Sbjct: 1076 DNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRY 1135

Query: 708  LTNTRPNIVHLVSFLSRFMHNPSKLHFAAAKRILRYLQGTKNFGLIYVKEEDNKLVGFTN 887
            LT TRP+I++ V  +SR+M +P+  HF AAKRILRY++GT NFGL Y    D KLVG+++
Sbjct: 1136 LTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSD 1195

Query: 888  SDWAGSLDDRKSTSGHVFCLG-----------------*CDFLVVKEAEDKLHCLRQKRS 1016
            SDW G +DDRKSTSG VF +G                  C+   V       H +  +  
Sbjct: 1196 SDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNL 1255

Query: 1017 TLQVEM---QLVKQFG*GEYSLTCSKNKTIQQFFIVVFHSRSRHVKASFH 1157
              ++ +   +  K F   + ++  +KN         VFH RS+H+   +H
Sbjct: 1256 LKELSLPQEEPTKIFVDNKSAIALAKNP--------VFHDRSKHIDTRYH 1297



 Score = 50.4 bits (119), Expect(3) = 1e-83
 Identities = 24/61 (39%), Positives = 37/61 (60%)
 Frame = +2

Query: 2    KHKAHLVAKGYS*QPSIDFTETFAAVVCMQTIRTVXXXXXXXXXXVFHLDVKSTFLSEEI 181
            ++KA LVAKGYS +  ID+ E FA V  ++T+R +          +  +DVKS FL+ ++
Sbjct: 897  RYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDL 956

Query: 182  E 184
            E
Sbjct: 957  E 957



 Score = 37.7 bits (86), Expect(3) = 1e-83
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 1135 VTLRHHFIRALVKNGEVKMEYVNRNDLFAYIFTKAVSVEKFSYFRNCL 1278
            +  R+H+IR  V   +V++EYV  +D  A  FTK +  E F   R+ L
Sbjct: 1292 IDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLL 1339