BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025341
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4...   149   3e-34
ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Po...   148   5e-34
gb|ABN10530.1| Lhca5 protein [Gentiana lutea]                         147   1e-33
ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4...   144   7e-33
ref|NP_175137.1| photosystem I light harvesting complex protein ...   143   1e-32

>ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
           vinifera] gi|302142320|emb|CBI19523.3| unnamed protein
           product [Vitis vinifera]
          Length = 264

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/82 (84%), Positives = 78/82 (95%)
 Frame = -2

Query: 247 LPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILLTDVLRVTGISNLPVWYEA 68
           L GDFGFDPLGLGEDPE+L+WYVQAELVHARFAMAGVAGIL+TD+LRVTGISNLPVWYEA
Sbjct: 73  LAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISNLPVWYEA 132

Query: 67  GAMRFGFASTRTLFVIQLLLMG 2
           GA++F FAST  LF++QL+LMG
Sbjct: 133 GAVKFEFASTEALFIVQLILMG 154


>ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
           gi|222835451|gb|EEE73886.1| light-harvesting complex I
           protein Lhca5 [Populus trichocarpa]
          Length = 266

 Score =  148 bits (373), Expect = 5e-34
 Identities = 71/82 (86%), Positives = 76/82 (92%)
 Frame = -2

Query: 247 LPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILLTDVLRVTGISNLPVWYEA 68
           L GDFGFDPLGLGEDP+SLKWYVQAELVHARFAMAGVAGIL TD+LRVTGI  LPVWYEA
Sbjct: 74  LAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRKLPVWYEA 133

Query: 67  GAMRFGFASTRTLFVIQLLLMG 2
           GA++F FASTRTL V+QLLLMG
Sbjct: 134 GAVKFEFASTRTLIVVQLLLMG 155


>gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
          Length = 272

 Score =  147 bits (370), Expect = 1e-33
 Identities = 68/82 (82%), Positives = 76/82 (92%)
 Frame = -2

Query: 247 LPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILLTDVLRVTGISNLPVWYEA 68
           L GDFGFDPLGLGEDPESLKWYVQAELVH+RFAMAGVAGIL TD+LR TG+SNLPVWYEA
Sbjct: 81  LAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSNLPVWYEA 140

Query: 67  GAMRFGFASTRTLFVIQLLLMG 2
           GA +F FA+T TLF++Q+LLMG
Sbjct: 141 GATKFQFANTTTLFIVQMLLMG 162


>ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
           [Cucumis sativus] gi|449522610|ref|XP_004168319.1|
           PREDICTED: chlorophyll a-b binding protein 4,
           chloroplastic-like [Cucumis sativus]
          Length = 259

 Score =  144 bits (363), Expect = 7e-33
 Identities = 66/82 (80%), Positives = 75/82 (91%)
 Frame = -2

Query: 247 LPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILLTDVLRVTGISNLPVWYEA 68
           L GDFGFDPLGLGEDP+SLKWYVQAELVH RFAM GV+G+LLTD+LRVTGIS LPVWY A
Sbjct: 67  LAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNA 126

Query: 67  GAMRFGFASTRTLFVIQLLLMG 2
           GA+ +GFA+ RTLF++QLLLMG
Sbjct: 127 GAVEYGFANKRTLFIVQLLLMG 148


>ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
           thaliana] gi|30693978|ref|NP_849778.1| photosystem I
           light harvesting complex protein 5 [Arabidopsis
           thaliana] gi|12321000|gb|AAG50618.1|AC083835_3
           light-harvesting complex protein [Arabidopsis thaliana]
           gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4
           [Arabidopsis thaliana] gi|19699116|gb|AAL90924.1|
           At1g45474/F2G19.4 [Arabidopsis thaliana]
           gi|62320735|dbj|BAD95402.1| light-harvesting complex
           protein [Arabidopsis thaliana]
           gi|332193996|gb|AEE32117.1| photosystem I light
           harvesting complex protein 5 [Arabidopsis thaliana]
           gi|332193997|gb|AEE32118.1| photosystem I light
           harvesting complex protein 5 [Arabidopsis thaliana]
          Length = 256

 Score =  143 bits (361), Expect = 1e-32
 Identities = 67/82 (81%), Positives = 74/82 (90%)
 Frame = -2

Query: 247 LPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILLTDVLRVTGISNLPVWYEA 68
           L GD+GFDPLGLGEDPESLKWYVQAELVH+RFAM GVAGIL TD+LR TGI NLPVWYEA
Sbjct: 63  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 122

Query: 67  GAMRFGFASTRTLFVIQLLLMG 2
           GA++F FAST+TL V+Q LLMG
Sbjct: 123 GAVKFDFASTKTLIVVQFLLMG 144