BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025320
         (1152 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solan...   305   1e-80
ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi...   304   3e-80
ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus c...   303   7e-80
ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloropla...   301   2e-79
ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide defo...   301   2e-79

>ref|NP_001234703.1| peptide deformylase 1A, chloroplastic [Solanum lycopersicum]
            gi|17433049|sp|Q9FUZ0.1|DEF1A_SOLLC RecName: Full=Peptide
            deformylase 1A, chloroplastic; Short=PDF 1A; AltName:
            Full=Polypeptide deformylase; Flags: Precursor
            gi|11320968|gb|AAG33981.1|AF271258_1 peptide
            deformylase-like protein [Solanum lycopersicum]
          Length = 277

 Score =  305 bits (781), Expect = 1e-80
 Identities = 166/275 (60%), Positives = 192/275 (69%), Gaps = 10/275 (3%)
 Frame = -1

Query: 1146 RVSQRLFPISSLPDKCFKTCKSSTIL----------KYPIFLGSRSCHVLQQPSGPXXXX 997
            R++QR+  +   P K  K+CK +  L          + PIF+     ++  +PS      
Sbjct: 7    RLAQRVLSVPFTP-KYLKSCKKTNPLTSHLMQLRGSQRPIFI---QWNLQGRPSVCTDLI 62

Query: 996  XXXXXXXXXRAGGWFXXXXXXXKEAMLPDIVKAGDPVLHEAAQEVPVEEIGSXXXXXXXX 817
                        GWF       K+AM PDIVKAGDPVLHE +Q++P+EEIGS        
Sbjct: 63   SKKNYSSATARAGWFLGLGEKKKQAM-PDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIE 121

Query: 816  XXXMVLRKAPGVGIAAPQIGIPLKIIVLEDTKEYISYAPKEENEAQDRRPFELLVILNPK 637
                V+R APGVG+AAPQIGIPLKIIVLEDT EYISYAPK+E +AQDRRPF LLVI+NPK
Sbjct: 122  EMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPK 181

Query: 636  LKKKNDKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRGGSPIRVDASGWQARILQHECD 457
            LKKK +KTALFFEGCLSVDGFRAVVERHL+VEVTG  R G  I+VDASGWQARILQHE D
Sbjct: 182  LKKKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYD 241

Query: 456  HLDGTIYVDKLVPRTFRTVENLDLPLPNGCHKLGV 352
            HLDGT+YVDK+ PRTFRTVENLDLPL  GC KLGV
Sbjct: 242  HLDGTLYVDKMAPRTFRTVENLDLPLAAGCPKLGV 276


>ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi|222845365|gb|EEE82912.1|
            peptide deformylase [Populus trichocarpa]
          Length = 299

 Score =  304 bits (778), Expect = 3e-80
 Identities = 162/268 (60%), Positives = 186/268 (69%)
 Frame = -1

Query: 1152 VHRVSQRLFPISSLPDKCFKTCKSSTILKYPIFLGSRSCHVLQQPSGPXXXXXXXXXXXX 973
            +HR S RL PIS L +KCFK     TI ++   L  +       P+ P            
Sbjct: 37   LHRCSLRLLPIS-LAEKCFKPTTLPTIFRFTRMLVPKP--EFMNPN-PHFTTRKSLSSSH 92

Query: 972  XRAGGWFXXXXXXXKEAMLPDIVKAGDPVLHEAAQEVPVEEIGSXXXXXXXXXXXMVLRK 793
                GW         +  LPDIVKAGDPVLHE A+EV  +EIGS            V+R 
Sbjct: 93   TAKAGWLLGMGEKK-KTSLPDIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRM 151

Query: 792  APGVGIAAPQIGIPLKIIVLEDTKEYISYAPKEENEAQDRRPFELLVILNPKLKKKNDKT 613
            APGVG+AAPQIGIPL+IIVLEDT EYI YAPK E +AQDRRPF+LLVI+NPKLKKK+++T
Sbjct: 152  APGVGLAAPQIGIPLRIIVLEDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRT 211

Query: 612  ALFFEGCLSVDGFRAVVERHLDVEVTGFGRGGSPIRVDASGWQARILQHECDHLDGTIYV 433
            A FFEGCLSVDGFRA+VERHLDVEV G  R G PI+VDASGWQARILQHECDHL+GT+YV
Sbjct: 212  AFFFEGCLSVDGFRAIVERHLDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYV 271

Query: 432  DKLVPRTFRTVENLDLPLPNGCHKLGVR 349
            DK+VPRTFRTVENLDLPL  GC + G R
Sbjct: 272  DKMVPRTFRTVENLDLPLAEGCPEPGSR 299


>ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis]
            gi|223543236|gb|EEF44768.1| polypeptide deformylase,
            putative [Ricinus communis]
          Length = 266

 Score =  303 bits (775), Expect = 7e-80
 Identities = 162/268 (60%), Positives = 186/268 (69%)
 Frame = -1

Query: 1152 VHRVSQRLFPISSLPDKCFKTCKSSTILKYPIFLGSRSCHVLQQPSGPXXXXXXXXXXXX 973
            +HR S RL PIS L DKC K  K   I +      S+      + + P            
Sbjct: 4    LHRFSLRLLPIS-LADKCLKPTKHHPIYRLTRIPISKPDF---RTTIPYSITRKSLSSSS 59

Query: 972  XRAGGWFXXXXXXXKEAMLPDIVKAGDPVLHEAAQEVPVEEIGSXXXXXXXXXXXMVLRK 793
                GW         +  LPDIVKAGDPVLHE A+EV  +EIGS            V+R+
Sbjct: 60   IAKAGWLLGLGENK-KMSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRR 118

Query: 792  APGVGIAAPQIGIPLKIIVLEDTKEYISYAPKEENEAQDRRPFELLVILNPKLKKKNDKT 613
            APGVG+AAPQIG+PL+IIVLEDT EYI YAPKEE +AQDRRPF+LLVILNPKLKKK ++T
Sbjct: 119  APGVGLAAPQIGVPLRIIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRT 178

Query: 612  ALFFEGCLSVDGFRAVVERHLDVEVTGFGRGGSPIRVDASGWQARILQHECDHLDGTIYV 433
            ALFFEGCLSVDGFRAVVER L+VEV+G  R G PI+VDASGWQARILQHECDHLDGT+YV
Sbjct: 179  ALFFEGCLSVDGFRAVVERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYV 238

Query: 432  DKLVPRTFRTVENLDLPLPNGCHKLGVR 349
            DK+VPRTFRTV+NLDLPL  GC  LG +
Sbjct: 239  DKMVPRTFRTVDNLDLPLAEGCPNLGAQ 266


>ref|XP_004156806.1| PREDICTED: peptide deformylase 1A, chloroplastic-like isoform 1
            [Cucumis sativus]
          Length = 267

 Score =  301 bits (772), Expect = 2e-79
 Identities = 166/271 (61%), Positives = 189/271 (69%), Gaps = 3/271 (1%)
 Frame = -1

Query: 1152 VHRVSQRLFPISSLPDKCFKTCKSSTILKYPIFLGSRSCHVLQQPSGPXXXXXXXXXXXX 973
            +HR S RLFPIS L ++C K       L  P F       +   P+ P            
Sbjct: 4    IHRFSFRLFPIS-LAERCRKPS-----LLPPNFRKLIHRPISSSPNIPKFIPVPKTYSSS 57

Query: 972  XRA---GGWFXXXXXXXKEAMLPDIVKAGDPVLHEAAQEVPVEEIGSXXXXXXXXXXXMV 802
              +    GWF        +  LP IVKAGDPVLHE A+EV  +EIGS           + 
Sbjct: 58   STSIAKAGWFLGLGEQK-KMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILT 116

Query: 801  LRKAPGVGIAAPQIGIPLKIIVLEDTKEYISYAPKEENEAQDRRPFELLVILNPKLKKKN 622
            +RKAPGVG+AAPQIGIPL+IIVLEDTKEYISYAPKEE +AQDRR F+LLVI+NPKLK K+
Sbjct: 117  MRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKS 176

Query: 621  DKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRGGSPIRVDASGWQARILQHECDHLDGT 442
            +KTALFFEGCLSVDGFRAVVER+LDVEV GF R G+PI+VDASGWQARILQHECDHLDGT
Sbjct: 177  NKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGT 236

Query: 441  IYVDKLVPRTFRTVENLDLPLPNGCHKLGVR 349
            +YVDK+VPRTFRT ENL LPL  GC KLG R
Sbjct: 237  LYVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267


>ref|XP_004152208.1| PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A,
            chloroplastic-like [Cucumis sativus]
          Length = 267

 Score =  301 bits (772), Expect = 2e-79
 Identities = 167/271 (61%), Positives = 190/271 (70%), Gaps = 3/271 (1%)
 Frame = -1

Query: 1152 VHRVSQRLFPISSLPDKCFKTCKSSTILKYPIFLGSRSCHVLQQPSGPXXXXXXXXXXXX 973
            +HR S RLFPIS L ++C K       L  P F       +   P+ P            
Sbjct: 4    IHRFSFRLFPIS-LAERCRKPS-----LLPPNFRKLIHRPISSSPNIPKFIPVPKTYSSS 57

Query: 972  XRA---GGWFXXXXXXXKEAMLPDIVKAGDPVLHEAAQEVPVEEIGSXXXXXXXXXXXMV 802
              +    GWF        +  LP IVKAGDPVLHE A+EV  +EIGS           + 
Sbjct: 58   STSIAKAGWFLGLGEQK-KMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVXKIIDDMILT 116

Query: 801  LRKAPGVGIAAPQIGIPLKIIVLEDTKEYISYAPKEENEAQDRRPFELLVILNPKLKKKN 622
            +RKAPGVG+AAPQIGIPL+IIVLEDTKEYISYAPKEE +AQDRR F+LLVI+NPKLK K+
Sbjct: 117  MRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLLVIINPKLKSKS 176

Query: 621  DKTALFFEGCLSVDGFRAVVERHLDVEVTGFGRGGSPIRVDASGWQARILQHECDHLDGT 442
            +KTALFFEGCLSVDGFRAVVER+LDVEV GF R G+PI+VDASGWQARILQHECDHLDGT
Sbjct: 177  NKTALFFEGCLSVDGFRAVVERYLDVEVAGFDRDGNPIKVDASGWQARILQHECDHLDGT 236

Query: 441  IYVDKLVPRTFRTVENLDLPLPNGCHKLGVR 349
            +YVDK+VPRTFRT ENL LPL  GC KLG R
Sbjct: 237  LYVDKMVPRTFRTTENLTLPLAEGCPKLGAR 267