BLASTX nr result

ID: Coptis21_contig00025219 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00025219
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314083.1| white-brown-complex ABC transporter family [...   185   4e-45
ref|XP_002513520.1| ATP-binding cassette transporter, putative [...   182   3e-44
gb|ADN33920.1| white-brown-complex ABC transporter family protei...   180   1e-43
ref|XP_002298391.1| white-brown-complex ABC transporter family [...   180   1e-43
ref|XP_003607359.1| ABC transporter G family member [Medicago tr...   180   1e-43

>ref|XP_002314083.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222850491|gb|EEE88038.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 662

 Score =  185 bits (469), Expect = 4e-45
 Identities = 88/95 (92%), Positives = 92/95 (96%)
 Frame = -2

Query: 286 LDEPTSGLDSAAAFFVIQTIRNIARDGRTVISSIHQPSSEVFTQFDDLFLLSGGETVYFG 107
           LDEPTSGLDSAAAFFVIQT+RNIARDGRTVISS+HQPSSEVF  FDDLFLLSGGETVYFG
Sbjct: 170 LDEPTSGLDSAAAFFVIQTLRNIARDGRTVISSVHQPSSEVFALFDDLFLLSGGETVYFG 229

Query: 106 EAKMAVQFFAEVGFPCPSRRNPSDHFLRCINTDFD 2
           EAKMAV+FFAE GFPCPSRRNPSDHFLRCIN+DFD
Sbjct: 230 EAKMAVEFFAEAGFPCPSRRNPSDHFLRCINSDFD 264


>ref|XP_002513520.1| ATP-binding cassette transporter, putative [Ricinus communis]
           gi|223547428|gb|EEF48923.1| ATP-binding cassette
           transporter, putative [Ricinus communis]
          Length = 707

 Score =  182 bits (462), Expect = 3e-44
 Identities = 86/95 (90%), Positives = 91/95 (95%)
 Frame = -2

Query: 286 LDEPTSGLDSAAAFFVIQTIRNIARDGRTVISSIHQPSSEVFTQFDDLFLLSGGETVYFG 107
           LDEPTSGLDSA+AFFVIQT+RNIARDGRTVISSIHQPSSEVF  FDDLFLLSGGETVYFG
Sbjct: 216 LDEPTSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 275

Query: 106 EAKMAVQFFAEVGFPCPSRRNPSDHFLRCINTDFD 2
           EAKM V+FFAE GFPCPSRRNPSDHFLRC+N+DFD
Sbjct: 276 EAKMGVEFFAEAGFPCPSRRNPSDHFLRCVNSDFD 310


>gb|ADN33920.1| white-brown-complex ABC transporter family protein [Cucumis melo
           subsp. melo]
          Length = 724

 Score =  180 bits (457), Expect = 1e-43
 Identities = 85/95 (89%), Positives = 90/95 (94%)
 Frame = -2

Query: 286 LDEPTSGLDSAAAFFVIQTIRNIARDGRTVISSIHQPSSEVFTQFDDLFLLSGGETVYFG 107
           LDEPTSGLDSA+AFFVIQT+RN+ARDGRTV+SSIHQPSSEVF  FDDLFLLSGGE VYFG
Sbjct: 233 LDEPTSGLDSASAFFVIQTLRNVARDGRTVVSSIHQPSSEVFALFDDLFLLSGGEAVYFG 292

Query: 106 EAKMAVQFFAEVGFPCPSRRNPSDHFLRCINTDFD 2
           EAKMAVQFFAE  FPCPSRRNPSDHFLRCIN+DFD
Sbjct: 293 EAKMAVQFFAEANFPCPSRRNPSDHFLRCINSDFD 327


>ref|XP_002298391.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222845649|gb|EEE83196.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 675

 Score =  180 bits (457), Expect = 1e-43
 Identities = 84/95 (88%), Positives = 91/95 (95%)
 Frame = -2

Query: 286 LDEPTSGLDSAAAFFVIQTIRNIARDGRTVISSIHQPSSEVFTQFDDLFLLSGGETVYFG 107
           LDEPTSGLDSA+AFFVIQT+RNIARDGRT+ISSIHQPSSEVF  FDDLFLLSGGETVYFG
Sbjct: 184 LDEPTSGLDSASAFFVIQTLRNIARDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 243

Query: 106 EAKMAVQFFAEVGFPCPSRRNPSDHFLRCINTDFD 2
           +AKMA++FFAE GFPCP RRNPSDHFLRCIN+DFD
Sbjct: 244 DAKMAIEFFAEAGFPCPRRRNPSDHFLRCINSDFD 278


>ref|XP_003607359.1| ABC transporter G family member [Medicago truncatula]
           gi|355508414|gb|AES89556.1| ABC transporter G family
           member [Medicago truncatula]
          Length = 693

 Score =  180 bits (456), Expect = 1e-43
 Identities = 83/95 (87%), Positives = 91/95 (95%)
 Frame = -2

Query: 286 LDEPTSGLDSAAAFFVIQTIRNIARDGRTVISSIHQPSSEVFTQFDDLFLLSGGETVYFG 107
           LDEPTSGLDSA+AFFV+QT+RN+ARDGRTVISSIHQPSSEVF  FDDLFLLSGGETVYFG
Sbjct: 200 LDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFG 259

Query: 106 EAKMAVQFFAEVGFPCPSRRNPSDHFLRCINTDFD 2
           EAKMA++FFAE GFPCP +RNPSDHFLRCIN+DFD
Sbjct: 260 EAKMAIEFFAEAGFPCPRKRNPSDHFLRCINSDFD 294


Top