BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024950
         (1424 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36057.3| unnamed protein product [Vitis vinifera]              437   e-120
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   367   4e-99
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   328   2e-87
ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   325   2e-86
ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair ...   315   2e-83

>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  437 bits (1124), Expect = e-120
 Identities = 226/447 (50%), Positives = 303/447 (67%), Gaps = 5/447 (1%)
 Frame = +1

Query: 7    SISVEESWCCLVKKFSGSLSEVFQYILVTSTTQEVCEADIHCGVKGLQILATYPRCVSPI 186
            S+S +ESWCC++  FS  L + F  +L  ST ++  EADI+ GVKGLQILAT+P    PI
Sbjct: 477  SVSAQESWCCMLHSFSSLLMKAFSSVLDASTDKDAYEADIYSGVKGLQILATFPGEFLPI 536

Query: 187  SESIFENVLTIFVSILATGCGETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKV 366
            S+SIFENVL  F+SI+     +TLLWKL LKAL+ IG+F++ FH SEKALSY  IVVEK+
Sbjct: 537  SKSIFENVLLTFISIIVEDFNKTLLWKLALKALVQIGSFIDRFHESEKALSYNYIVVEKI 596

Query: 367  VSFISRDNSAMPLPLQLEAVSGIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGET 546
            VS +  D+  +P  L+LEA+S IGT GLN ML++ QGLE AI AN  E  V+GN KS + 
Sbjct: 597  VSLMFLDDFGLPFQLRLEAISDIGTTGLNVMLKIVQGLEDAIFANLSEVYVHGNLKSAKI 656

Query: 547  LIPLLECFSNKVLPWFAKSGGFEDVAIRFSANIWDQIESNNSFNISDQGKELLDRMMESM 726
             + LLEC+SNK+LP    +G FEDV  RF+ NIW+QIE++ +F++  Q  ELL+  M +M
Sbjct: 657  AVQLLECYSNKLLPGIHGAGDFEDVLSRFAVNIWNQIENSMAFSVGAQENELLNATMTAM 716

Query: 727  KQAVAGCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDK 906
            K AV  CS  +QG I++KAY++L S   F   +S+  +  ++LE LQ  Q L   SC+DK
Sbjct: 717  KLAVGSCSEGSQGKIIKKAYSVLSSCPSFTLMESMPITGTVQLEGLQHTQDLECFSCRDK 776

Query: 907  WIIYLFASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDT 1086
            W+I LFAS IIA+R + H+PN+R++L LFM  LL GH P AQALGSM+NKL    + V+ 
Sbjct: 777  WVISLFASAIIAVRPQTHIPNIRVVLHLFMTNLLKGHVPAAQALGSMVNKLCPKSNGVEI 836

Query: 1087 SCACNLEEAMDIVLKMGL---SSTSPLRRYRVVDGDHE--AVDKPQSVGVCEFVQSKAMV 1251
            S  C LE+A+DI+    L    +  PL+R   +  D+E    +   S   C+ +Q  A+ 
Sbjct: 837  SSTCTLEDALDIIFNTSLWDSHNHGPLKRCSGIGVDNEMGLANLCLSASNCQLLQVCAIE 896

Query: 1252 GLAWIGKGLVMRGSEKMKDVVMIFLRC 1332
            GLAWIGKGL++RG EK+KD+ MIFLRC
Sbjct: 897  GLAWIGKGLLLRGHEKVKDITMIFLRC 923


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
            communis] gi|223544868|gb|EEF46383.1| DNA
            repair/transcription protein met18/mms19, putative
            [Ricinus communis]
          Length = 1174

 Score =  367 bits (942), Expect = 4e-99
 Identities = 209/496 (42%), Positives = 303/496 (61%), Gaps = 25/496 (5%)
 Frame = +1

Query: 10   ISVEESWCCLVKKFSGSLSEVFQYILVTSTTQEVCEADIHCGVKGLQILATYPRCVSPIS 189
            IS  E++CCL+++FS SL+E F   L TST+    + D++ GVKGLQILAT+P     +S
Sbjct: 477  ISTNETYCCLLQRFSTSLTETFSAALATSTSGPAQDVDMYLGVKGLQILATFPGGYLFLS 536

Query: 190  ESIFENVLTIFVSILATGCGETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVV 369
            +  F+N+L  F+SI+     +TLLW   LKAL+ IG+F+   + S+K +SY+ IVV K++
Sbjct: 537  KLTFDNILMTFLSIITVDFNKTLLWNQALKALVQIGSFVHGCNESDKEMSYVDIVVGKMI 596

Query: 370  SFISRDNSAMPLPLQLEAVSGIGTAGLNFMLRVTQGLEAAISAN---------------F 504
               S  + +MP  L+L A+S IG +G  +ML+V  GLE AI AN                
Sbjct: 597  LLASSPDFSMPWSLKLTAISSIGMSGQKYMLKVFLGLEEAIRANLAEIYVCMIKKKIYVL 656

Query: 505  FEASVNGNFKSGETLIPLLECFSNKVLPWFAKSGGFEDVAIRFSANIWDQIESNNSFNIS 684
            +   V GN KS + L+ LLEC+S+++LPW  K+ GFE+V ++F  N+W+QIE+ N+F ++
Sbjct: 657  YSCLVQGNLKSAKILLQLLECYSDELLPWIQKTEGFEEVLMQFVVNLWNQIENFNAFTVA 716

Query: 685  DQGKE-LLDRMMESMKQAVAGCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEE 861
              GKE LLD +M+ MK AVA CS  +Q +I+ KAY +L SST  P K+S L  + ++LE 
Sbjct: 717  FHGKESLLDAIMKVMKDAVAFCSVESQNVIIYKAYGVLSSSTFLPLKES-LSENSVQLEC 775

Query: 862  LQVDQSLNTLSCKDKWIIYLFASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQALG 1041
             +  Q ++ LS +D+WI  LFASVIIALR + H+PN RI+L LF+  LL GH   A+ALG
Sbjct: 776  FRAIQQMDRLSSRDEWIHSLFASVIIALRPQTHIPNTRIVLHLFITALLKGHVTTAEALG 835

Query: 1042 SMINKLPSTKSNVDTSCACNLEEAMDIVLKMGL----SSTSPLRRYRVVDGDHE-----A 1194
            S++NKL    ++   S  C +EEAMDI+  + L     + S  R  R  +GD        
Sbjct: 836  SLVNKLDQKSNDACISGDCTIEEAMDIIFSINLLCSFGNGSSGRFDRTRNGDEMDLIKLC 895

Query: 1195 VDKPQSVGVCEFVQSKAMVGLAWIGKGLVMRGSEKMKDVVMIFLRCXXXXXXXXXXXXQQ 1374
            +D P       +++  A+VGLAWIGKGL+MRG EK+KD+ M+FL C            + 
Sbjct: 896  LDAPN----LAWIKIPAIVGLAWIGKGLLMRGHEKVKDITMVFLNCLLSDGEIGASPLKH 951

Query: 1375 DTLQECREQEIHPLVM 1422
             +L+   EQ++   VM
Sbjct: 952  GSLENNGEQDMQQSVM 967


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
            truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
            excision repair protein-like protein [Medicago
            truncatula]
          Length = 1140

 Score =  328 bits (841), Expect = 2e-87
 Identities = 188/469 (40%), Positives = 276/469 (58%), Gaps = 4/469 (0%)
 Frame = +1

Query: 22   ESWCCLVKKFSGSLSEVFQYILVTSTTQEVCEADIHCGVKGLQILATYPRCVSPISESIF 201
            E++C ++   S  L   F  +L  +  +     DI+ GVKGLQILA +   V PI +S F
Sbjct: 473  ETYCTILHSSSAVLFNAFGSVLAVTADRCPSHPDIYIGVKGLQILAMFHLDVFPIPKSTF 532

Query: 202  ENVLTIFVSILATGCGETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVVSFIS 381
            EN+L  F+SI+    G+T+LW  TLKAL  IG+F++ F  SEKA+SY + VV+K++  +S
Sbjct: 533  ENILKKFMSIIIEDFGQTVLWNATLKALFHIGSFVQKFSESEKAMSYRSFVVDKIMEMLS 592

Query: 382  RDNSAMPLPLQLEAVSGIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETLIPLL 561
             D+ A+P  L++EA+  IG  G+  ML + Q +E AI  N  E  V+ N  S ET + LL
Sbjct: 593  LDDIALPFSLKVEALYDIGMTGMKNMLTILQAMEGAIFTNLSE--VHSNLTSHETAVQLL 650

Query: 562  ECFSNKVLPWFAKSGGFEDVAIRFSANIWDQIESNNSFNISDQGKELLDRMMESMKQAVA 741
            EC+S K+LPW  K+GG E+  ++F+ +IW+Q  +   FN   + K LLD MM++MK +V 
Sbjct: 651  ECYSCKLLPWILKNGGAEEFVVQFAVDIWNQAGNCMDFNSPFEDKGLLDAMMKAMKVSVG 710

Query: 742  GCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKDKWIIYL 921
             CS  +Q + ++KAY+ L S T+F   D         +  L +      +S +D+ I+ L
Sbjct: 711  CCSVESQNVTIQKAYSTLSSHTKFQLND---------VGRLPLTSGKYDISPRDEGILLL 761

Query: 922  FASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVDTSCACN 1101
            FASVIIALR + H+PN+R +L LF+  LL G  PVAQALGSM+NKL S  +  + S    
Sbjct: 762  FASVIIALRPKTHIPNIRGLLHLFIITLLKGVVPVAQALGSMLNKLTSKSNGAEKSDELT 821

Query: 1102 LEEAMDIVL--KMGLSSTSPLRRYRVVDGDHEAVDKPQSVGVC--EFVQSKAMVGLAWIG 1269
            LEEA+DI+   K+  SS + L+ Y       + V     +G+     +QS A+ GL+WIG
Sbjct: 822  LEEALDIIFNTKIWFSSNNMLQIYNGSSNGSDIVLTDLCLGITNDRLLQSNAICGLSWIG 881

Query: 1270 KGLVMRGSEKMKDVVMIFLRCXXXXXXXXXXXXQQDTLQECREQEIHPL 1416
            KGL++RG EK+KD+ MIF  C             + +L+   +Q+  PL
Sbjct: 882  KGLLLRGHEKIKDITMIFTECLISDRRKTSVPLVEGSLENTEKQKCDPL 930


>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  325 bits (833), Expect = 2e-86
 Identities = 179/448 (39%), Positives = 269/448 (60%), Gaps = 4/448 (0%)
 Frame = +1

Query: 1    LHSISVEESWCCLVKKFSGSLSEVFQYILVTSTTQEVCEADIHCGVKGLQILATYPRCVS 180
            L  +   E+ C ++  FS  L   F  +L  S  +   + D + GVKGLQILA +   V 
Sbjct: 469  LQYVFEHETCCTMLHSFSTPLFNAFGSVLAVSADRGPLDPDTYVGVKGLQILAMFHSDVF 528

Query: 181  PISESIFENVLTIFVSILATGCGETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVE 360
            PI +SIFEN+L  F+SI+     +T+LW+  LKAL  +G+F + F  SEKA+SY  +VVE
Sbjct: 529  PIQKSIFENILKKFMSIIIEDFNKTILWEAALKALHHVGSFFQKFCESEKAMSYRNLVVE 588

Query: 361  KVVSFISRDNSAMPLPLQLEAVSGIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSG 540
            K+V  +S D+  +   L++EA+  IG  G+  ML + QGL  A+ AN  +  V+ N +S 
Sbjct: 589  KIVEILSLDDITLSFSLKVEALLNIGKTGMKNMLTILQGLGRAVFANLSKVYVHRNLRSS 648

Query: 541  ETLIPLLECFSNKVLPWFAKSGGFEDVAIRFSANIWDQIESNNSFNISDQGKELLDRMME 720
            E  + LLEC+S ++LPW  ++GG ED  ++F+ +IW Q  +    +   +GK LLD MM+
Sbjct: 649  EIAVQLLECYSCQLLPWIHENGGSEDFVMQFAVDIWSQAGNCMDLSTPFEGKGLLDAMMK 708

Query: 721  SMKQAVAGCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCK 900
            +M+ +V  CS  +Q LI+ KAY++L S T F  K+         +E L +      +S +
Sbjct: 709  AMRLSVGSCSVESQNLIIRKAYSVLSSHTNFQLKE---------VERLPLTPGKYDISLR 759

Query: 901  DKWIIYLFASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNV 1080
            D+ II LFASV+IA+  + ++PN+R+++ LF+  LL G  PVAQALGS++NKL ST S  
Sbjct: 760  DEGIISLFASVVIAVCPKTYIPNIRVLVHLFIITLLRGVVPVAQALGSILNKLVSTSSTA 819

Query: 1081 DTSCACNLEEAMDIVL--KMGLSSTSPLRRYRVVDGDHEAVDKPQSVGVC--EFVQSKAM 1248
            + S    LEEA+D +   K+  SST  L+R       +E V     +G+     +Q  A+
Sbjct: 820  ENSSDLTLEEALDAIFNTKISFSSTDMLQRCNGTSNGNEMVFTDICLGIANDRMLQINAI 879

Query: 1249 VGLAWIGKGLVMRGSEKMKDVVMIFLRC 1332
             GL+W+GKGL++RG EK+KD+ MIF+ C
Sbjct: 880  CGLSWMGKGLLLRGHEKIKDITMIFMEC 907


>ref|XP_004141784.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Cucumis
            sativus]
          Length = 1147

 Score =  315 bits (807), Expect = 2e-83
 Identities = 187/474 (39%), Positives = 278/474 (58%), Gaps = 11/474 (2%)
 Frame = +1

Query: 34   CLVKKFSGSLSEVFQYILV---TSTTQEVCEADIH-----CGVKGLQILATYPRCVSPIS 189
            C VK+ S S+ ++F   +V   +ST   + + D+H     C VKGL  L+T+P   SP+S
Sbjct: 470  CSVKEKSYSMLQIFSCSVVQLLSSTFSGIVKRDLHDAEFYCAVKGLLNLSTFPVGSSPVS 529

Query: 190  ESIFENVLTIFVSILATGCGETLLWKLTLKALMDIGAFLENFHVSEKALSYMTIVVEKVV 369
              IFE++L  F+S +        LW   LKAL  IG+F++ +  S ++ SYM IVVEK+ 
Sbjct: 530  RVIFEDILLEFMSFITVNFKFGSLWNHALKALQHIGSFVDKYPGSVESQSYMHIVVEKIA 589

Query: 370  SFISRDNSAMPLPLQLEAVSGIGTAGLNFMLRVTQGLEAAISANFFEASVNGNFKSGETL 549
               S  +  +PL L+LE    IG  G ++ML++  G+E  I  N  E  V GN KS E +
Sbjct: 590  LMFSPHDEVLPLMLKLEMAVDIGRTGRSYMLKIVGGIEETIFYNLSEVYVYGNSKSVEIV 649

Query: 550  IPLLECFSNKVLPWFAKSGGFEDVAIRFSANIWDQIESNNSFNISDQG--KELLDRMMES 723
            + LL+C+S K+LPWF ++G FE+V +RF+ NIWDQIE  ++F+ S     + LLD  M +
Sbjct: 650  LSLLDCYSTKILPWFDEAGDFEEVILRFALNIWDQIEKCSTFSTSMDKCIQVLLDATMMA 709

Query: 724  MKQAVAGCSNSNQGLIVEKAYNILLSSTQFPRKDSLLFSDPMKLEELQVDQSLNTLSCKD 903
            +K +V  CS  +Q +IV+KA+N+LL+S+  P K +L  + P+++E LQ  Q  +  + +D
Sbjct: 710  LKLSVRSCSKESQNIIVQKAFNVLLTSSFSPLKVTLSNTIPVQMEGLQFLQQKDNPTSRD 769

Query: 904  KWIIYLFASVIIALRREIHVPNVRIILKLFMNLLLSGHAPVAQALGSMINKLPSTKSNVD 1083
            +WI+ LFASV IALR ++HVP+VR+I++L M     G  P AQALGSMINKL      V+
Sbjct: 770  EWILSLFASVTIALRPQVHVPDVRLIIRLLMLSTTRGCVPAAQALGSMINKLSVKSDKVE 829

Query: 1084 TSCACNLEEAMDIVLKMGLSSTSPLRRYRVVDGDHE-AVDKPQSVGVCEFVQSKAMVGLA 1260
             S   +LEEA+DI+ K   +    L      DG      D   S+     +Q  A+VGL+
Sbjct: 830  VSSYVSLEEAIDIIFK---TEFRCLHNESTGDGSEMFLTDLCSSIEKSSLLQVHAVVGLS 886

Query: 1261 WIGKGLVMRGSEKMKDVVMIFLRCXXXXXXXXXXXXQQDTLQECREQEIHPLVM 1422
            WIGKGL++ G +K++D+ M+FL+             QQ  L++  E  +   VM
Sbjct: 887  WIGKGLLLCGHDKVRDITMVFLQLLVSKSRTDASPLQQFKLEKDNETSLDFAVM 940