BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024908
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...   178   4e-43
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]   178   4e-43
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...   171   4e-41
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containi...   119   2e-25

>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score =  178 bits (452), Expect = 4e-43
 Identities = 82/142 (57%), Positives = 109/142 (76%)
 Frame = -2

Query: 429 GKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHQLEWNPDVQRALLDGCRIYQD 250
           G+ +F CI   K  H  LM++LL R  LFDEA+ F+EEH+LE + +V RALLDGCRI+ +
Sbjct: 416 GRFYFNCITAPKSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLDGCRIHHN 475

Query: 249 KKMAKQIVERLIELEPLNSDNYVLLSNLYAAYTQWDRVKSSREMITDMGLMPKRAYSWIE 70
            + AK+++E+L +L+ LN+DNYVLLSN Y+++ +WD V   RE I DMGL P++AYSWIE
Sbjct: 476 MRTAKRVIEQLCDLQTLNADNYVLLSNWYSSFAKWDMVNELRETIRDMGLKPRKAYSWIE 535

Query: 69  VRNKVHVFEAGDVSHPRSERIY 4
            RNK+HVF  GDVSHPRSE+IY
Sbjct: 536 FRNKIHVFGTGDVSHPRSEKIY 557


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score =  178 bits (452), Expect = 4e-43
 Identities = 82/142 (57%), Positives = 109/142 (76%)
 Frame = -2

Query: 429 GKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHQLEWNPDVQRALLDGCRIYQD 250
           G+ +F CI   K  H  LM++LL R  LFDEA+ F+EEH+LE + +V RALLDGCRI+ +
Sbjct: 488 GRFYFNCITAPKSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLDGCRIHHN 547

Query: 249 KKMAKQIVERLIELEPLNSDNYVLLSNLYAAYTQWDRVKSSREMITDMGLMPKRAYSWIE 70
            + AK+++E+L +L+ LN+DNYVLLSN Y+++ +WD V   RE I DMGL P++AYSWIE
Sbjct: 548 MRTAKRVIEQLCDLQTLNADNYVLLSNWYSSFAKWDMVNELRETIRDMGLKPRKAYSWIE 607

Query: 69  VRNKVHVFEAGDVSHPRSERIY 4
            RNK+HVF  GDVSHPRSE+IY
Sbjct: 608 FRNKIHVFGTGDVSHPRSEKIY 629


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score =  171 bits (434), Expect = 4e-41
 Identities = 81/142 (57%), Positives = 105/142 (73%)
 Frame = -2

Query: 429 GKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHQLEWNPDVQRALLDGCRIYQD 250
           GK +F CI+E  + H  LM+SLL RA LFDEA+ F+EEH +E + +V RALLDGC ++  
Sbjct: 417 GKFYFNCIKEPNITHYALMVSLLARACLFDEARAFMEEHHIERHAEVLRALLDGCWMHHR 476

Query: 249 KKMAKQIVERLIELEPLNSDNYVLLSNLYAAYTQWDRVKSSREMITDMGLMPKRAYSWIE 70
           + + KQ+ E+L +LEPL+++NYVLLSN Y+   +WD V   RE I  MG  PK+AYSWIE
Sbjct: 477 RNIGKQVFEQLCDLEPLDAENYVLLSNWYSDNGKWDLVDKLRETIMSMGSKPKKAYSWIE 536

Query: 69  VRNKVHVFEAGDVSHPRSERIY 4
            +NKVHVF  GD+SHPRSERIY
Sbjct: 537 FQNKVHVFGTGDISHPRSERIY 558


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score =  169 bits (427), Expect = 3e-40
 Identities = 78/142 (54%), Positives = 105/142 (73%)
 Frame = -2

Query: 429 GKDFFKCIRETKVEHRCLMISLLVRARLFDEAKDFVEEHQLEWNPDVQRALLDGCRIYQD 250
           G  +F CI +  V H  L ++LL RA   DEA+ FVE+ +L+ +P++ RALLDGCR ++ 
Sbjct: 383 GDSYFSCITKPTVAHIALKVALLARAGRLDEARTFVEKKKLDKHPEILRALLDGCRNHRQ 442

Query: 249 KKMAKQIVERLIELEPLNSDNYVLLSNLYAAYTQWDRVKSSREMITDMGLMPKRAYSWIE 70
           +K+ K+I+E+L +LEPLN++NY+LLSN YA   +WD V+  RE I DMGL PK+AYSWIE
Sbjct: 443 QKLGKRIIEQLCDLEPLNAENYILLSNWYACNEKWDMVEKLRETIRDMGLRPKKAYSWIE 502

Query: 69  VRNKVHVFEAGDVSHPRSERIY 4
             NK+HVF  GDVSHPRS+ IY
Sbjct: 503 FCNKIHVFGTGDVSHPRSQNIY 524


>ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40720-like
            [Vitis vinifera]
          Length = 854

 Score =  119 bits (299), Expect = 2e-25
 Identities = 59/128 (46%), Positives = 80/128 (62%)
 Frame = -2

Query: 387  HRCLMISLLVRARLFDEAKDFVEEHQLEWNPDVQRALLDGCRIYQDKKMAKQIVERLIEL 208
            H   ++ LL R    DEA++F++   +E +  V RALL  CR Y D K AK I E+L +L
Sbjct: 699  HYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKL 758

Query: 207  EPLNSDNYVLLSNLYAAYTQWDRVKSSREMITDMGLMPKRAYSWIEVRNKVHVFEAGDVS 28
            EP+N+ NYVLLSN+YA    W  V+  R  + + GL      SWI V+N+VH F AGD S
Sbjct: 759  EPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRS 818

Query: 27   HPRSERIY 4
            HP+S++IY
Sbjct: 819  HPQSDKIY 826