BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024863
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521673.1| pentatricopeptide repeat-containing protein,...   248   6e-64
ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   237   1e-60
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   229   4e-58
ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi...   228   9e-58
ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containi...   219   4e-55

>ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539064|gb|EEF40660.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 341

 Score =  248 bits (633), Expect = 6e-64
 Identities = 126/202 (62%), Positives = 156/202 (77%)
 Frame = -1

Query: 617 ILIKGLCESDRLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQA 438
           ILIKGLCE+  L+AAF +LDEFPK  C+PNVRT+STLM++LC    V++AF L +RME  
Sbjct: 143 ILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENE 202

Query: 437 GVDPDTITFNMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEA 258
           G++ DTITFN+LISGL K+GR+ EG+ELL KM+LKGCEPN GSYQ VLYGLLD+ KF EA
Sbjct: 203 GIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEA 262

Query: 257 KCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILES 78
           K  MD+M+  G  PSF SYK +I GLC E L+G+VD VLK+ML+QGFVP+MGMWK I+ S
Sbjct: 263 KDFMDRMVCEGNGPSFVSYKKLIDGLCKEKLIGEVDCVLKQMLKQGFVPKMGMWKHIVGS 322

Query: 77  MFSEQIISTSVSQCQFSELAKG 12
           M SE    TS+    FS++  G
Sbjct: 323 MLSESGDCTSIC---FSQVIGG 341



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
 Frame = -1

Query: 587 RLDAAFALLDEFPK-LHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQAGVDPDTITF 411
           R+  A   L + P+  +C P+V+T++ ++N L   R  D   E+ E+    GV+ D    
Sbjct: 82  RIKVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCL 141

Query: 410 NMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMIS 231
           N+LI GLC+ G +     +LD+   + C+PN  ++  +++ L    +  +A  L+D+M +
Sbjct: 142 NILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMEN 201

Query: 230 MGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 84
            G+     ++ ++I GL     + +   +L KM  +G  P  G ++++L
Sbjct: 202 EGIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVL 250


>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score =  237 bits (604), Expect = 1e-60
 Identities = 115/171 (67%), Positives = 140/171 (81%)
 Frame = -1

Query: 617 ILIKGLCESDRLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQA 438
           ILIKGLCE+  L+AAF +LDEFPK  CEPNVRT+STLM+ LCK  +VDEAF L ERME+ 
Sbjct: 156 ILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKE 215

Query: 437 GVDPDTITFNMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEA 258
           G+D DTITFN+LISGL KQG+V EG+ELL++M +KGCEPN GSYQ +LYGLLD++K++E 
Sbjct: 216 GIDADTITFNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAEKYVEG 275

Query: 257 KCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRM 105
           K  M +MI  GV PSF SYK ++HGLC E LL D+D VLK+M RQGFVP+M
Sbjct: 276 KEFMVRMIGQGVDPSFVSYKKLVHGLCKERLLRDLDWVLKQMARQGFVPKM 326



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 1/176 (0%)
 Frame = -1

Query: 587 RLDAAFALLDEFPK-LHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQAGVDPDTITF 411
           R+  A   L + PK  +C PNV++++ ++N L   +  D   E+  +    G++ D  + 
Sbjct: 95  RIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSL 154

Query: 410 NMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMIS 231
           N+LI GLC+ G +     +LD+   + CEPN  ++  +++GL    K  EA  L+++M  
Sbjct: 155 NILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEK 214

Query: 230 MGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQ 63
            G+     ++ ++I GL  +  + +   +L++M  +G  P  G +++IL  +   +
Sbjct: 215 EGIDADTITFNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAE 270


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  229 bits (583), Expect = 4e-58
 Identities = 112/193 (58%), Positives = 145/193 (75%)
 Frame = -1

Query: 617 ILIKGLCESDRLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQA 438
           IL+KGLC S  +DAA  LLDE+PK  C PNVRT+STLM+ LC+  RV+ A  L ERME+ 
Sbjct: 197 ILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMERE 256

Query: 437 GVDPDTITFNMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEA 258
           GV PDT+ FN+LISGL K+GRV EG+ELL +M+LKGC PN GSYQ VLYG+LD+ +F +A
Sbjct: 257 GVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKA 316

Query: 257 KCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILES 78
           K  M +MI  GV PSF SYK+VI+GLC ENL+ DV  +LK+M+ QGFVP   MW++IL++
Sbjct: 317 KEFMCQMIDEGVSPSFVSYKMVIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQT 376

Query: 77  MFSEQIISTSVSQ 39
           MF   +  + + +
Sbjct: 377 MFPRNVSQSEIME 389


>ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  228 bits (580), Expect = 9e-58
 Identities = 111/193 (57%), Positives = 145/193 (75%)
 Frame = -1

Query: 617 ILIKGLCESDRLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQA 438
           IL+KGLC S  +DAA  LLDE+PK  C PNVRT+STLM+ LC+  RV+ A  L ERME+ 
Sbjct: 197 ILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMERE 256

Query: 437 GVDPDTITFNMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEA 258
           GV PDT+ FN+LISGL K+GRV EG+ELL +M+LKGC PN GSYQ VLYG+LD+ +F +A
Sbjct: 257 GVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKA 316

Query: 257 KCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILES 78
           K  M +MI  GV PSF SYK++I+GLC ENL+ DV  +LK+M+ QGFVP   MW++IL++
Sbjct: 317 KEFMCQMIDEGVSPSFVSYKMMIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQT 376

Query: 77  MFSEQIISTSVSQ 39
           MF   +  + + +
Sbjct: 377 MFPRNVSQSEIME 389


>ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Cucumis sativus]
           gi|449503658|ref|XP_004162112.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Cucumis sativus]
          Length = 411

 Score =  219 bits (557), Expect = 4e-55
 Identities = 108/183 (59%), Positives = 138/183 (75%)
 Frame = -1

Query: 617 ILIKGLCESDRLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQA 438
           IL+KGLC+S  LDAA  +LDEFP+  C PNVRT+STL++ LC++  +  A EL  +ME  
Sbjct: 203 ILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMENE 262

Query: 437 GVDPDTITFNMLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEA 258
           GV PDTITFN+LISGL K+ R+ E +ELL +M+LKGC PN G+YQ VLYGLLD+ KF+EA
Sbjct: 263 GVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVLYGLLDTGKFIEA 322

Query: 257 KCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILES 78
           +  M +MIS G+ PSF SYK ++ GLC + L  DVD VLK+M+ QGFVP++GMWK IL  
Sbjct: 323 RDCMHRMISEGMDPSFVSYKKLLSGLCKKKLTEDVDWVLKQMVMQGFVPKVGMWKVILRC 382

Query: 77  MFS 69
           M S
Sbjct: 383 MLS 385



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 45/168 (26%), Positives = 90/168 (53%)
 Frame = -1

Query: 587 RLDAAFALLDEFPKLHCEPNVRTYSTLMNFLCKHRRVDEAFELCERMEQAGVDPDTITFN 408
           RL+ A   L + P  +C P+V+T++ ++N L   +  D   E+     + G++ D    N
Sbjct: 143 RLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLN 202

Query: 407 MLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISM 228
           +L+ GLC+ G +   +++LD+   + C PN  ++  +L+GL ++ +   A  L  KM + 
Sbjct: 203 ILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMENE 262

Query: 227 GVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 84
           GV P   ++ ++I GL  +  + +   +L +M  +G  P  G ++++L
Sbjct: 263 GVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVL 310