BLASTX nr result

ID: Coptis21_contig00024794 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024794
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24883.3| unnamed protein product [Vitis vinifera]              100   1e-19
ref|XP_002275403.1| PREDICTED: uncharacterized protein LOC100261...   100   1e-19
ref|XP_002299943.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18
gb|ABK92537.1| unknown [Populus trichocarpa]                           97   1e-18
ref|XP_002313304.1| predicted protein [Populus trichocarpa] gi|2...    95   7e-18

>emb|CBI24883.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  100 bits (249), Expect = 1e-19
 Identities = 45/75 (60%), Positives = 58/75 (77%)
 Frame = -3

Query: 296 FTLYVGTKNKAMYGAGRSMQDMLESGEGLPLIVRLKLSTNFKVVWNLINPKFHDSVECML 117
           F LYVGT+NK MYGAGR+MQDMLE+GEGLPL +R+ L ++F+VVW+LI PKFH   EC+L
Sbjct: 253 FQLYVGTRNKPMYGAGRAMQDMLETGEGLPLAIRVSLKSSFRVVWSLIVPKFHHQAECLL 312

Query: 116 VLHGENTKQHYNKAY 72
            L+    K+H  + Y
Sbjct: 313 FLNRAYDKRHGTQVY 327


>ref|XP_002275403.1| PREDICTED: uncharacterized protein LOC100261971 [Vitis vinifera]
          Length = 354

 Score =  100 bits (249), Expect = 1e-19
 Identities = 45/75 (60%), Positives = 58/75 (77%)
 Frame = -3

Query: 296 FTLYVGTKNKAMYGAGRSMQDMLESGEGLPLIVRLKLSTNFKVVWNLINPKFHDSVECML 117
           F LYVGT+NK MYGAGR+MQDMLE+GEGLPL +R+ L ++F+VVW+LI PKFH   EC+L
Sbjct: 272 FQLYVGTRNKPMYGAGRAMQDMLETGEGLPLAIRVSLKSSFRVVWSLIVPKFHHQAECLL 331

Query: 116 VLHGENTKQHYNKAY 72
            L+    K+H  + Y
Sbjct: 332 FLNRAYDKRHGTQVY 346


>ref|XP_002299943.1| predicted protein [Populus trichocarpa] gi|222847201|gb|EEE84748.1|
           predicted protein [Populus trichocarpa]
          Length = 294

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = -3

Query: 296 FTLYVGTKNKAMYGAGRSMQDMLESGEGLPLIVRLKLSTNFKVVWNLINPKFHDSVECML 117
           F L+VGT+NK MYGAG +MQDMLES  GLP+++R+ L +NF+VVWNLI P FH    C+L
Sbjct: 213 FQLFVGTRNKPMYGAGTNMQDMLESENGLPIVIRVSLRSNFRVVWNLIKPAFHHRAVCLL 272

Query: 116 VLHGENTKQHYNKAY 72
           VL G   K+H  + Y
Sbjct: 273 VLDGAYDKKHRTQVY 287


>gb|ABK92537.1| unknown [Populus trichocarpa]
          Length = 342

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = -3

Query: 296 FTLYVGTKNKAMYGAGRSMQDMLESGEGLPLIVRLKLSTNFKVVWNLINPKFHDSVECML 117
           F L+VGT+NK MYGAG +MQDMLES  GLP+++R+ L +NF+VVWNLI P FH    C+L
Sbjct: 261 FQLFVGTRNKPMYGAGTNMQDMLESENGLPIVIRVSLRSNFRVVWNLIKPAFHHRAVCLL 320

Query: 116 VLHGENTKQHYNKAY 72
           VL G   K+H  + Y
Sbjct: 321 VLDGAYDKKHRTQVY 335


>ref|XP_002313304.1| predicted protein [Populus trichocarpa] gi|222849712|gb|EEE87259.1|
           predicted protein [Populus trichocarpa]
          Length = 141

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = -3

Query: 296 FTLYVGTKNKAMYGAGRSMQDMLESGEGLPLIVRLKLSTNFKVVWNLINPKFHDSVECML 117
           F L VGT+NK MYGAGR+MQDMLESG GLP++++L L +NF+VVWNLI PKFH    C+L
Sbjct: 80  FQLSVGTRNKPMYGAGRNMQDMLESGNGLPIVIQLSLRSNFRVVWNLIKPKFHHQALCLL 139

Query: 116 VL 111
           VL
Sbjct: 140 VL 141


Top