BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024729
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC02672.1| polyprotein [Arabidopsis arenosa]                       69   6e-10
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...    68   9e-10
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...    67   3e-09
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    66   4e-09
gb|AAC02666.1| polyprotein [Arabidopsis thaliana]                      66   4e-09

>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
          Length = 1390

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
 Frame = +3

Query: 54  YNGGDKVIFSNGEGLDIKNTGSPLIPTLLTKFH*NKHYT*LVILYKNLSQISR*------ 215
           YNGG++V  ++G GL I ++GS L+PT  T+    K    +  + KNL  + R       
Sbjct: 356 YNGGEEVTIADGSGLPISHSGSALLPTP-TRSLDLKDVLYVPDIQKNLISVYRMCNTNGV 414

Query: 216 --PLFHNFYIFYDLCEESYLTEDNFQRTHYCWPF---IQSHSFKSNRPPTNFFCQ*SFII 380
               F   +   DL   + L +   +   Y WP    I +  F S  P T+       + 
Sbjct: 415 SVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTD-------LP 467

Query: 381 NMAQGLGHPAQPIL--VFAQTKLSVKRSPQRSSFLPSCQLGKNHRLPFFLSKGRSSSPLQ 554
           +    LGHP+ PIL  + ++  L +  S Q       C + K+H+LPF+ +   SS PL+
Sbjct: 468 SWHARLGHPSLPILKTLISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLE 527

Query: 555 LIHIDPW 575
            ++ D W
Sbjct: 528 YLYTDVW 534


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
           sativa Japonica Group]
           gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
           protein [Oryza sativa Japonica Group]
          Length = 1219

 Score = 68.2 bits (165), Expect = 9e-10
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
 Frame = +3

Query: 33  KSSVFSQYNGGDKVIFSNGEGLDIKNTGSPLIPTLLTKFH*NKHYT*LVILYKNLSQISR 212
           K +   +Y G D++  ++GEG+DI++ G   +PT     H  K+   +    KNL  + R
Sbjct: 330 KLTTREKYKGTDQIHTASGEGMDIQHIGHSYVPTSSRPLH-LKNILHVPKASKNLISVHR 388

Query: 213 *PLFHNFYIFYDLCEESYLTEDNF-QRTHYCWPFIQS-HSFKSNRPPTNFFCQ*SFIINM 386
             L  + Y F ++ ++ +L +D   +RT    P  +  +   +  P    F         
Sbjct: 389 --LVADNYAFLEIHQKYFLIKDKVTRRTILEGPCRRDLYPLPAGDPIKQVFAVMPSFERW 446

Query: 387 AQGLGHPAQPIL--VFAQTKLSVKRSPQRSSFLPSCQLGKNHRLPFFLSKGRSSSPLQLI 560
              LGH ++PI+  V  Q KL         S   +CQ GK+H+LPF      SS+PL+LI
Sbjct: 447 HGRLGHASKPIVLRVINQNKLPCSNESPSESVCDACQQGKSHQLPFPKFFSVSSNPLELI 506

Query: 561 HIDPW 575
           H D W
Sbjct: 507 HSDVW 511


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1241

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
 Frame = +3

Query: 33  KSSVFSQYNGGDKVIFSNGEGLDIKNTGSPLIPTLLTKFH*NKHYT*LVILYKNLSQISR 212
           K  V  +Y GGDK+  ++G G++IK+ G  +I T   + H  K+   +    KNL    R
Sbjct: 326 KLDVREKYKGGDKIHTASGAGMEIKHIGDSVIHTPTRELH-LKNILHVPQAKKNLISAHR 384

Query: 213 *PLFH--------NFYIFYDLCEESYLTEDNFQRTHYCWPFIQSHSFKSNRPPTNFFCQ* 368
             + +        N+++  D    + + +   +R  Y  P   +    +   P+      
Sbjct: 385 LAMDNFAFLEVHSNYFLIKDRVTRNTILKGRCRRRLYSLPTSPAKQVHAATTPS------ 438

Query: 369 SFIINMAQGLGHPAQPIL--VFAQTKLSVKRSPQRSSFLPSCQLGKNHRLPFFLSKGRSS 542
                    LGHPA PI+  V ++  L       + S   +CQ GK+H+LP+  S   SS
Sbjct: 439 --FSRWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSICDACQKGKSHQLPYPKSSSVSS 496

Query: 543 SPLQLIHIDPW 575
            PL+LI  D W
Sbjct: 497 QPLELIFSDVW 507


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
 Frame = +3

Query: 33  KSSVFSQYNGGDKVIFSNGEGLDIKNTGSPLIPTLLTKFH*NKHYT*LVILYKNLSQISR 212
           K +   +Y G D++  ++GEG+ IK+ G  ++PT     H  K+   +    KNL  + +
Sbjct: 338 KLTTKERYKGTDQIHTASGEGMSIKHVGHAIVPTPSRPLH-LKNVLHVPEAAKNLVSVHK 396

Query: 213 *PLFHNFYIFYDLCEESYLTEDNFQRTHYC--------WPFIQSHSFKSNRPPTNFFCQ* 368
             L  + Y F ++  + +L +D   R            +P     S +     T  F   
Sbjct: 397 --LVADNYAFLEIHGKYFLIKDKATRRTILEGPCRRGLYPLPARSSLRQAFVATPSF--- 451

Query: 369 SFIINMAQGLGHPAQPIL--VFAQTKLSVKRSPQRSSFLPSCQLGKNHRLPFFLSKGRSS 542
              +     LGHP++PI+  + +Q KL    +    S   +CQ  K H+LPF  S   S+
Sbjct: 452 ---VRWHGRLGHPSKPIVLRILSQNKLPCLSNSVNESVCDACQQAKCHQLPFPRSTSVSN 508

Query: 543 SPLQLIHIDPW 575
           +PL+LIH D W
Sbjct: 509 NPLELIHSDVW 519


>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
          Length = 1451

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 13/187 (6%)
 Frame = +3

Query: 54  YNGGDKVIFSNGEGLDIKNTGSPLIPTLLTKFH*NKHYT*LVILYKNLSQISR*------ 215
           YNG ++V  ++G GL I ++GS L+PT  T+    K    +  + KNL  + R       
Sbjct: 356 YNGDEEVTIADGSGLPISHSGSALLPTP-TRSLALKDVLYVPDIQKNLISVYRMCNTNGV 414

Query: 216 --PLFHNFYIFYDLCEESYLTEDNFQRTHYCWPF---IQSHSFKSNRPPTNFFCQ*SFII 380
               F   +   DL   + L +   +   Y WP    I +  F S  P T+       + 
Sbjct: 415 SVEFFPAHFQVKDLSTGARLLQGKTKNELYEWPVNSSIATSMFASPTPKTD-------LP 467

Query: 381 NMAQGLGHPAQPIL--VFAQTKLSVKRSPQRSSFLPSCQLGKNHRLPFFLSKGRSSSPLQ 554
           +    LGHP+ PIL  + ++  L +  S Q       C + K+H+LPF+ +   SS PL+
Sbjct: 468 SWHARLGHPSLPILKALISKFSLPISHSLQNQLLCSDCSINKSHKLPFYSNTIASSHPLE 527

Query: 555 LIHIDPW 575
            ++ D W
Sbjct: 528 YLYTDVW 534