BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024720
         (500 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   180   1e-43
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]   176   2e-42
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...   176   2e-42
ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   171   4e-41
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   171   6e-41

>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  180 bits (456), Expect = 1e-43
 Identities = 89/164 (54%), Positives = 117/164 (71%)
 Frame = +2

Query: 5   NLVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYL 184
           N+ GIL+TKRR+EESGI MDVVMCNVLI+AL M+  FED Y+ +KGMPEM L+P+SVTY 
Sbjct: 415 NIPGILQTKRRLEESGISMDVVMCNVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYC 474

Query: 185 TMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGK 364
           TMIDGYCK GRI+EALE+FD  R T  ++++ CYN II  LC NG+ +MAI+  +EL  +
Sbjct: 475 TMIDGYCKVGRIEEALEVFDEFRKT-LISSLACYNSIINGLCKNGMTEMAIEALLELNHE 533

Query: 365 ALVPERATYVVLLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVC 496
            L  +  T+ +L +++F   N    LD V   E LG + + SVC
Sbjct: 534 GLELDIGTFRMLTKTIFEENNTKKALDLVYRMEGLGPDIYSSVC 577


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  176 bits (445), Expect = 2e-42
 Identities = 83/165 (50%), Positives = 122/165 (73%)
 Frame = +2

Query: 2   NNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTY 181
           +N++GIL+TK+R+EE+GI MDVVMCNVLI+AL M++ +ED Y+ +KGMPEM L+P+S+TY
Sbjct: 400 DNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITY 459

Query: 182 LTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIG 361
            TMIDGYCK G+I+EALE+FD  R T S+++  CYN II  LC  G+V+MAI+  +EL  
Sbjct: 460 CTMIDGYCKVGKINEALEVFDDFRKT-SISSYACYNSIINGLCKKGMVEMAIEALLELDH 518

Query: 362 KALVPERATYVVLLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVC 496
           K L+ +  T+ +L++++F   +   VLD V   E L  + + ++C
Sbjct: 519 KGLMLDTGTHRLLMKTIFKENSSKVVLDLVCRMESLELDIYNAIC 563



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/147 (23%), Positives = 67/147 (45%)
 Frame = +2

Query: 32  RRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKT 211
           R++EE G+ +DVV+ +V +   +  +   + +   + M E G+  D V+Y  +IDG+ K 
Sbjct: 205 RKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKL 264

Query: 212 GRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATY 391
           G ++++            +     Y  I+ A C  G ++ A  +F+ +    +  +   +
Sbjct: 265 GDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVF 324

Query: 392 VVLLRSLFNARNEGGVLDFVQEFEKLG 472
           VVL+       +   V   + E EK G
Sbjct: 325 VVLIDGFGRVGDFDRVFQLLVEMEKRG 351



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/153 (26%), Positives = 67/153 (43%)
 Frame = +2

Query: 8   LVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLT 187
           LV +    R + E GI  D V   +LI     L + E +++    M + G++P+ VTY  
Sbjct: 232 LVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTA 291

Query: 188 MIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKA 367
           ++  YCK GRI+EA  +F   +          + V+I      G  D    + +E+  + 
Sbjct: 292 IMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRG 351

Query: 368 LVPERATYVVLLRSLFNARNEGGVLDFVQEFEK 466
           + P   TY     ++ N  ++ G      EF K
Sbjct: 352 IGPNVVTY----NAVVNGLSKYGRTQEADEFSK 380


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484091|gb|AES65294.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  176 bits (445), Expect = 2e-42
 Identities = 83/165 (50%), Positives = 122/165 (73%)
 Frame = +2

Query: 2   NNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTY 181
           +N++GIL+TK+R+EE+GI MDVVMCNVLI+AL M++ +ED Y+ +KGMPEM L+P+S+TY
Sbjct: 417 DNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITY 476

Query: 182 LTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIG 361
            TMIDGYCK G+I+EALE+FD  R T S+++  CYN II  LC  G+V+MAI+  +EL  
Sbjct: 477 CTMIDGYCKVGKINEALEVFDDFRKT-SISSYACYNSIINGLCKKGMVEMAIEALLELDH 535

Query: 362 KALVPERATYVVLLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVC 496
           K L+ +  T+ +L++++F   +   VLD V   E L  + + ++C
Sbjct: 536 KGLMLDTGTHRLLMKTIFKENSSKVVLDLVCRMESLELDIYNAIC 580



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/147 (23%), Positives = 67/147 (45%)
 Frame = +2

Query: 32  RRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKT 211
           R++EE G+ +DVV+ +V +   +  +   + +   + M E G+  D V+Y  +IDG+ K 
Sbjct: 222 RKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKL 281

Query: 212 GRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATY 391
           G ++++            +     Y  I+ A C  G ++ A  +F+ +    +  +   +
Sbjct: 282 GDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVF 341

Query: 392 VVLLRSLFNARNEGGVLDFVQEFEKLG 472
           VVL+       +   V   + E EK G
Sbjct: 342 VVLIDGFGRVGDFDRVFQLLVEMEKRG 368



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/153 (26%), Positives = 67/153 (43%)
 Frame = +2

Query: 8   LVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLT 187
           LV +    R + E GI  D V   +LI     L + E +++    M + G++P+ VTY  
Sbjct: 249 LVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTA 308

Query: 188 MIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKA 367
           ++  YCK GRI+EA  +F   +          + V+I      G  D    + +E+  + 
Sbjct: 309 IMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRG 368

Query: 368 LVPERATYVVLLRSLFNARNEGGVLDFVQEFEK 466
           + P   TY     ++ N  ++ G      EF K
Sbjct: 369 IGPNVVTY----NAVVNGLSKYGRTQEADEFSK 397


>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  171 bits (434), Expect = 4e-41
 Identities = 88/163 (53%), Positives = 114/163 (69%)
 Frame = +2

Query: 5   NLVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYL 184
           N+ GILETKRR+EE G+ +D+VMCN +IKAL+M+   EDAY+ +KGM  M L+ DSVTY 
Sbjct: 343 NVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYC 402

Query: 185 TMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGK 364
           TMI+GYC+  RI+EALEIFD  R T S+++V CY  +I  LC  G+VDMAI+VFIEL  K
Sbjct: 403 TMINGYCRVSRIEEALEIFDEFRKT-SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEK 461

Query: 365 ALVPERATYVVLLRSLFNARNEGGVLDFVQEFEKLGHEAFQSV 493
            L     TY  L+++ F  +   GVL FV   E LG EAF ++
Sbjct: 462 GLELVSGTYTSLIKASFEEQGAEGVLKFVHRIENLGREAFDTI 504



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 38/143 (26%), Positives = 70/143 (48%)
 Frame = +2

Query: 38   VEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGR 217
            V++ GI +++   N +I  L        A+  F  + ++ L+P  +TY T+ID  CK G 
Sbjct: 665  VKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGC 724

Query: 218  IDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVV 397
            + +A ++F+          V  YN +I   C  G ++ A+++ I+L  + + P+  T   
Sbjct: 725  LLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSA 784

Query: 398  LLRSLFNARNEGGVLDFVQEFEK 466
            L+    +  +  G L F  EF+K
Sbjct: 785  LINGYCHKGDMEGALGFFFEFKK 807



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 45/134 (33%), Positives = 62/134 (46%)
 Frame = +2

Query: 83   LIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTS 262
            ++K+L       DAY    G  E   + D V Y  MID  CK G +D+AL++    +   
Sbjct: 610  VLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKG 669

Query: 263  SVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVVLLRSLFNARNEGGVL 442
                +  YN +I  LC  G +  A  +F  L    LVP   TY  L+ SL     EG +L
Sbjct: 670  IALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLC---KEGCLL 726

Query: 443  DFVQEFEKLGHEAF 484
            D  Q FEK+  + F
Sbjct: 727  DAKQLFEKMVIKGF 740



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 38/154 (24%), Positives = 71/154 (46%)
 Frame = +2

Query: 11  VGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTM 190
           +G LE   ++++ G++ ++V    ++       + ++AY+ FK +  +G+  D   Y+T+
Sbjct: 213 IGFLE---KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTL 269

Query: 191 IDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKAL 370
           IDG+C  G ID    + +         ++  YN II  LC  G    A +V      K +
Sbjct: 270 IDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEV-----SKGI 324

Query: 371 VPERATYVVLLRSLFNARNEGGVLDFVQEFEKLG 472
             +  T+  LL       N  G+L+  +  E+ G
Sbjct: 325 AGDAVTFSTLLHGYIEEENVKGILETKRRLEEDG 358



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 36/138 (26%), Positives = 58/138 (42%)
 Frame = +2

Query: 8   LVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLT 187
           LV  +   + + E GI  D V   +LI         E A    + M + GL P+ VTY  
Sbjct: 174 LVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTA 233

Query: 188 MIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKA 367
           ++ G+CK G++DEA  +F              Y  +I   C  G +D    +  ++  + 
Sbjct: 234 IMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRG 293

Query: 368 LVPERATYVVLLRSLFNA 421
           + P   TY  ++  L  A
Sbjct: 294 ISPSIVTYNSIINGLCKA 311


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  171 bits (433), Expect = 6e-41
 Identities = 88/163 (53%), Positives = 114/163 (69%)
 Frame = +2

Query: 5   NLVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYL 184
           N+ GILETKRR+EE G+ +D+VMCN +IKAL+M+   EDAY+ +KGM  M L+ DSVTY 
Sbjct: 343 NVKGILETKRRLEEDGVCIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYC 402

Query: 185 TMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGK 364
           TMI+GYC+  RI+EALEIFD  R T S+++V CY  +I  LC  G+VDMAI+VFIEL  K
Sbjct: 403 TMINGYCRVXRIEEALEIFDEFRKT-SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEK 461

Query: 365 ALVPERATYVVLLRSLFNARNEGGVLDFVQEFEKLGHEAFQSV 493
            L     TY  L+++ F  +   GVL FV   E LG EAF ++
Sbjct: 462 GLELVSGTYTSLIKASFEEQGAEGVLKFVHRIENLGREAFDTI 504



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 38/143 (26%), Positives = 70/143 (48%)
 Frame = +2

Query: 38   VEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGR 217
            V++ GI +++   N +I  L        A+  F  + ++ L+P  +TY T+ID  CK G 
Sbjct: 665  VKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLCKEGC 724

Query: 218  IDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVV 397
            + +A ++F+          V  YN +I   C  G ++ A+++ I+L  + + P+  T   
Sbjct: 725  LLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSA 784

Query: 398  LLRSLFNARNEGGVLDFVQEFEK 466
            L+    +  +  G L F  EF+K
Sbjct: 785  LINGYCHKGDMEGALGFFFEFKK 807



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 45/134 (33%), Positives = 62/134 (46%)
 Frame = +2

Query: 83   LIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTS 262
            ++K+L       DAY    G  E   + D V Y  MID  CK G +D+AL++    +   
Sbjct: 610  VLKSLKKNGRILDAYKLVIGAEENLPVMDLVDYSIMIDVLCKEGHLDKALDLCAFVKKKG 669

Query: 263  SVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVVLLRSLFNARNEGGVL 442
                +  YN +I  LC  G +  A  +F  L    LVP   TY  L+ SL     EG +L
Sbjct: 670  IALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEITYATLIDSLC---KEGCLL 726

Query: 443  DFVQEFEKLGHEAF 484
            D  Q FEK+  + F
Sbjct: 727  DAKQLFEKMVXKGF 740



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 38/154 (24%), Positives = 71/154 (46%)
 Frame = +2

Query: 11  VGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLTM 190
           +G LE   ++++ G++ ++V    ++       + ++AY+ FK +  +G+  D   Y+T+
Sbjct: 213 IGFLE---KMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTL 269

Query: 191 IDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKAL 370
           IDG+C  G ID    + +         ++  YN II  LC  G    A +V      K +
Sbjct: 270 IDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEV-----SKGI 324

Query: 371 VPERATYVVLLRSLFNARNEGGVLDFVQEFEKLG 472
             +  T+  LL       N  G+L+  +  E+ G
Sbjct: 325 AGDAVTFSTLLHGYIEEENVKGILETKRRLEEDG 358



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 36/138 (26%), Positives = 58/138 (42%)
 Frame = +2

Query: 8   LVGILETKRRVEESGIRMDVVMCNVLIKALIMLREFEDAYSAFKGMPEMGLLPDSVTYLT 187
           LV  +   + + E GI  D V   +LI         E A    + M + GL P+ VTY  
Sbjct: 174 LVEAIRKHKEMIEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTA 233

Query: 188 MIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKA 367
           ++ G+CK G++DEA  +F              Y  +I   C  G +D    +  ++  + 
Sbjct: 234 IMLGFCKKGKLDEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRG 293

Query: 368 LVPERATYVVLLRSLFNA 421
           + P   TY  ++  L  A
Sbjct: 294 ISPSIVTYNSIINGLCKA 311