BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024716
         (1040 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|2...   127   4e-27
ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis ly...    99   1e-18
ref|NP_188979.2| RNA recognition motif-containing protein [Arabi...    98   3e-18
ref|NP_001118682.1| RNA recognition motif-containing protein [Ar...    94   5e-17

>ref|XP_002314482.1| predicted protein [Populus trichocarpa] gi|222863522|gb|EEF00653.1|
            predicted protein [Populus trichocarpa]
          Length = 702

 Score =  127 bits (319), Expect = 4e-27
 Identities = 91/268 (33%), Positives = 142/268 (52%), Gaps = 6/268 (2%)
 Frame = -2

Query: 790  EKGSNSDYASFDYSRSRRPSPQDSLPPQKDSSRRDPNTLLFTEKGREQKVLLVRFLRTSQ 611
            ++G N D A       +  +PQ  L   +  S + P T L    G  +  LL+RFL    
Sbjct: 361  DEGGNLDIAKRIIKLEK--TPQAPLETSEKDSNQTPLTSL--ADGDTENKLLLRFLHKDV 416

Query: 610  SETDIKSAF---GPIDDIYFISSC--SDVYKDAYVRFKTKEGMRKALTNSSTVVGKYDVI 446
             + DI S F   GPI  I  +SS   S+++ DA++ F+T++G+ KAL     ++   +  
Sbjct: 417  GDGDIISCFRNCGPISKIEKVSSVKGSNLF-DAFLHFETRQGLHKALEKPEVLIKNSNAF 475

Query: 445  LEPVSPSINTSNRLARPNLIGVCGIPPSLVKNPTRTVMVKGLPQNVSSHHLEETFSFSGA 266
            +       +T++R++ PNLIG   I  +LVK+PTRTV +K L  ++SSH L+E  SF  +
Sbjct: 476  IH------DTASRISIPNLIGDIDISVALVKHPTRTVKIKQLTDDISSHQLKEALSFCRS 529

Query: 265  RITAFFMGSSSSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNV-A 89
             I   F+G+SSS                    + +SG +LS+FR+DAP TT+VRI N+  
Sbjct: 530  GINV-FLGASSSNAYVEFESEDAKERALAKHFLQVSGKQLSIFRVDAPRTTVVRILNINP 588

Query: 88   RRENTICEVCKSYGKVKRLIHRSPGIYD 5
            +  + +  +CKS+GK+ R+  R   I D
Sbjct: 589  QCRSNVLTICKSFGKLWRMKLRHENIAD 616


>ref|XP_002883427.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329267|gb|EFH59686.1| nucleic acid binding protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 785

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 5/217 (2%)
 Frame = -2

Query: 640  LLVRFLRTSQSE---TDIKSAFGPIDDIYFISSCSD-VYKDAYVRFKTKEGMRKALTNSS 473
            +L+RFL+ S  +    ++ S FG +  +  I S    +YKDA + F+T   ++KAL    
Sbjct: 486  VLLRFLQESCQKKHIVEVFSQFGAVLHVQEIPSFEGCIYKDALLTFETNTAVKKALEKGR 545

Query: 472  TVVGKYDVILEPVSPSINTSNRLARPNLIGVCGIPPSLVKNPTRTVMVKGLPQNVSSHHL 293
              V   + ++E  S   +   R+  P+LIG   +P +LVK P+RTV +  L  + SS+ +
Sbjct: 546  VTVMNNNAVVEATSQE-DMVERICIPDLIGDPDVPVALVKEPSRTVKIHPLTHDFSSNQI 604

Query: 292  EETFSFSGARITAFFMGSSSSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTT 113
            +E   F  + I+ F +GSS +                   SI I  ++L + RID P TT
Sbjct: 605  KEALKFCRSNISKFILGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDIPRTT 664

Query: 112  IVRISNVARRE-NTICEVCKSYGKVKRLIHRSPGIYD 5
            + RISN+++     +  +C  YG++K++  R  G+ D
Sbjct: 665  VARISNLSKSAMKDVRALCVPYGQIKQVYIRGNGVVD 701


>ref|NP_188979.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|11994322|dbj|BAB02281.1| unnamed protein product
            [Arabidopsis thaliana] gi|332643236|gb|AEE76757.1| RNA
            recognition motif-containing protein [Arabidopsis
            thaliana]
          Length = 811

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 8/220 (3%)
 Frame = -2

Query: 640  LLVRFLRTSQSETDIKSAFGP-------IDDIYFISSCSDVYKDAYVRFKTKEGMRKALT 482
            +L+RFL  S  +  I  AF         + +I  I  C  +YKDA + F+T   ++KAL 
Sbjct: 511  VLLRFLPESSMKKHIVKAFSSQFGAVLHVQEIPSIEGC--IYKDALLTFETNTAVKKALK 568

Query: 481  NSSTVVGKYDVILEPVSPSINTSNRLARPNLIGVCGIPPSLVKNPTRTVMVKGLPQNVSS 302
                 V  Y+ ++E  S   +   R+  P+LIG   +P +LVK P RTV +  L  + SS
Sbjct: 569  KGHVTVMNYNTVVEATSQE-DMVERICIPDLIGDPDVPVALVKEPARTVKIHPLTHDFSS 627

Query: 301  HHLEETFSFSGARITAFFMGSSSSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAP 122
            + ++E   F  + I+ F +GSS +                   SI I  ++L + RID P
Sbjct: 628  NQIKEALKFCRSNISKFTLGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDIP 687

Query: 121  VTTIVRISNVARRE-NTICEVCKSYGKVKRLIHRSPGIYD 5
             T + RISN+++     +  +C  YG+++ +  R  G+ D
Sbjct: 688  RTIVARISNLSKSAMRDVRALCVPYGQIRGVYIRGTGVAD 727


>ref|NP_001118682.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|332643237|gb|AEE76758.1| RNA recognition
            motif-containing protein [Arabidopsis thaliana]
          Length = 771

 Score = 94.0 bits (232), Expect = 5e-17
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 2/202 (0%)
 Frame = -2

Query: 604  TDIKSAFGPIDDIYFISSCSD-VYKDAYVRFKTKEGMRKALTNSSTVVGKYDVILEPVSP 428
            T +   FG +  +  I S    +YKDA + F+T   ++KAL      V  Y+ ++E  S 
Sbjct: 487  TTVNPKFGAVLHVQEIPSIEGCIYKDALLTFETNTAVKKALKKGHVTVMNYNTVVEATSQ 546

Query: 427  SINTSNRLARPNLIGVCGIPPSLVKNPTRTVMVKGLPQNVSSHHLEETFSFSGARITAFF 248
              +   R+  P+LIG   +P +LVK P RTV +  L  + SS+ ++E   F  + I+ F 
Sbjct: 547  E-DMVERICIPDLIGDPDVPVALVKEPARTVKIHPLTHDFSSNQIKEALKFCRSNISKFT 605

Query: 247  MGSSSSVXXXXXXXXXXXXXXXXACSIPISGSKLSVFRIDAPVTTIVRISNVARRE-NTI 71
            +GSS +                   SI I  ++L + RID P T + RISN+++     +
Sbjct: 606  LGSSRTDAFVEFETEDGKERALAEHSISICNTQLFISRIDIPRTIVARISNLSKSAMRDV 665

Query: 70   CEVCKSYGKVKRLIHRSPGIYD 5
              +C  YG+++ +  R  G+ D
Sbjct: 666  RALCVPYGQIRGVYIRGTGVAD 687