BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024701
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519809.1| nuclear pore complex protein nup93, putative...    50   3e-11
ref|NP_191294.5| nuclear pore complex component Nup93/Nic96 doma...    52   8e-11
ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620...    48   1e-10
ref|XP_003597861.1| hypothetical protein MTR_2g103370 [Medicago ...    49   2e-10
gb|ACJ86226.1| unknown [Medicago truncatula] gi|388495458|gb|AFK...    49   2e-10

>ref|XP_002519809.1| nuclear pore complex protein nup93, putative [Ricinus communis]
           gi|223541048|gb|EEF42605.1| nuclear pore complex protein
           nup93, putative [Ricinus communis]
          Length = 710

 Score = 50.4 bits (119), Expect(2) = 3e-11
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 QGMLLSSCVSQQFAPQLSEWITSGGMVSAETPATASEECE 3
           + + LSS  SQQFAP L+EWI +GG+V  E  A ASEECE
Sbjct: 333 RNIALSSRASQQFAPLLTEWINTGGIVPPEIAAAASEECE 372



 Score = 43.1 bits (100), Expect(2) = 3e-11
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -3

Query: 174 STYLQIYFCLRTGYYNEARNVAV 106
           +T+ QIYFCLRTGYY+EARN+A+
Sbjct: 315 TTWQQIYFCLRTGYYDEARNIAL 337


>ref|NP_191294.5| nuclear pore complex component Nup93/Nic96 domain-containing
           protein [Arabidopsis thaliana]
           gi|332646124|gb|AEE79645.1| nuclear pore complex
           component Nup93/Nic96 domain-containing protein
           [Arabidopsis thaliana]
          Length = 860

 Score = 52.0 bits (123), Expect(2) = 8e-11
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -1

Query: 92  QQFAPQLSEWITSGGMVSAETPATASEECE 3
           QQFAP L+EWIT+GG V+A+T ATASEECE
Sbjct: 371 QQFAPLLTEWITTGGTVAAQTAATASEECE 400



 Score = 40.0 bits (92), Expect(2) = 8e-11
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -3

Query: 174 STYLQIYFCLRTGYYNEARNVA 109
           +T+ QIYFCLRTGYY EAR +A
Sbjct: 342 TTWQQIYFCLRTGYYEEAREIA 363


>ref|XP_004136664.1| PREDICTED: uncharacterized protein At2g41620-like [Cucumis sativus]
           gi|449494745|ref|XP_004159635.1| PREDICTED:
           uncharacterized protein At2g41620-like [Cucumis sativus]
          Length = 863

 Score = 48.1 bits (113), Expect(2) = 1e-10
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = -1

Query: 122 QGMLLSSCVSQQFAPQLSEWITSGGMVSAETPATASEECE 3
           + + LSS  S QFAP L+EWI +GGMV  +  + ASEECE
Sbjct: 364 RNIALSSRASNQFAPLLTEWINTGGMVPVDIASVASEECE 403



 Score = 43.1 bits (100), Expect(2) = 1e-10
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -3

Query: 174 STYLQIYFCLRTGYYNEARNVAV 106
           +T+ QIYFCLRTGYY+EARN+A+
Sbjct: 346 TTWQQIYFCLRTGYYDEARNIAL 368


>ref|XP_003597861.1| hypothetical protein MTR_2g103370 [Medicago truncatula]
           gi|87162600|gb|ABD28395.1| Nucleoporin interacting
           component; Protein prenyltransferase [Medicago
           truncatula] gi|355486909|gb|AES68112.1| hypothetical
           protein MTR_2g103370 [Medicago truncatula]
          Length = 859

 Score = 48.9 bits (115), Expect(2) = 2e-10
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = -1

Query: 122 QGMLLSSCVSQQFAPQLSEWITSGGMVSAETPATASEECE 3
           + + LSS  S QFAP L+EWI +GGMV  E    ASEECE
Sbjct: 360 RNVALSSRASHQFAPLLTEWINTGGMVPEEVATAASEECE 399



 Score = 42.0 bits (97), Expect(2) = 2e-10
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -3

Query: 174 STYLQIYFCLRTGYYNEARNVAV 106
           +T+ QIYFCLR+GYY+EARNVA+
Sbjct: 342 TTWQQIYFCLRSGYYDEARNVAL 364


>gb|ACJ86226.1| unknown [Medicago truncatula] gi|388495458|gb|AFK35795.1| unknown
           [Medicago truncatula]
          Length = 610

 Score = 48.9 bits (115), Expect(2) = 2e-10
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = -1

Query: 122 QGMLLSSCVSQQFAPQLSEWITSGGMVSAETPATASEECE 3
           + + LSS  S QFAP L+EWI +GGMV  E    ASEECE
Sbjct: 111 RNVALSSRASHQFAPLLTEWINTGGMVPEEVATAASEECE 150



 Score = 42.0 bits (97), Expect(2) = 2e-10
 Identities = 17/23 (73%), Positives = 22/23 (95%)
 Frame = -3

Query: 174 STYLQIYFCLRTGYYNEARNVAV 106
           +T+ QIYFCLR+GYY+EARNVA+
Sbjct: 93  TTWQQIYFCLRSGYYDEARNVAL 115