BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024695
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   350   1e-94
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...   313   2e-83
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   312   4e-83
ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containi...   312   4e-83
ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|2...   270   2e-70

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  350 bits (899), Expect = 1e-94
 Identities = 164/251 (65%), Positives = 203/251 (80%)
 Frame = -1

Query: 754 SLNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPI 575
           SL  L++ALLLF    +PH+FICNS+I+AFSH+H+P T  SIY++M+ NSI PNN+T+P 
Sbjct: 55  SLGLLDSALLLFTHHSKPHVFICNSLIRAFSHNHTPHTPFSIYTHMHSNSILPNNFTFPF 114

Query: 574 ILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERD 395
           +LK+L+D K + +GQC+HT   K G   DIYV NSLLNVY+SCGDM  C R+FDEMP RD
Sbjct: 115 LLKSLADFKGLSEGQCIHTHVVKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRD 174

Query: 394 VVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIHD 215
           VVSWT+LI G R+  +YDDAL AFE+MQ+ GV+PN VTMV ALSACA  GALEMGVWIH+
Sbjct: 175 VVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHE 234

Query: 214 YVKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMSEKNIFTWNAVIKGLALAKSGEE 35
           +++R+ WE DVILGTSLIDMYGKCG+I+ GL V +SM EKN+FTWN++IKGLALA+SG E
Sbjct: 235 FIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAE 294

Query: 34  AVRWFSIMEVE 2
           AV WF  ME E
Sbjct: 295 AVWWFYRMEQE 305



 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 3/234 (1%)
 Frame = -1

Query: 754 SLNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPI 575
           S   +   + +F ++    +     +I  +  +     +L  +  M    + PN+ T   
Sbjct: 156 SCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVN 215

Query: 574 ILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERD 395
            L   +D   ++ G  +H    + G   D+ +  SL+++Y  CG +     +F  M E++
Sbjct: 216 ALSACADFGALEMGVWIHEFIRRSGWEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKN 275

Query: 394 VVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIHD 215
           V +W  LI+G    R   +A++ F RM+  G+  + VT++  L AC+ SG ++MG  I  
Sbjct: 276 VFTWNSLIKGLALARSGAEAVWWFYRMEQEGIKADEVTLIAVLCACSHSGMVQMGRQIFG 335

Query: 214 YVKRNEWEV--DVILGTSLIDMYGKCGKIDVGLSVLKSMS-EKNIFTWNAVIKG 62
            +   ++E    V     +ID+  + G +   + V+  M  E N   W A + G
Sbjct: 336 SLMNGKYEFFPGVKHYACVIDLLARAGILQEAMEVMTRMPFEPNKVMWGAFLAG 389


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score =  313 bits (803), Expect = 2e-83
 Identities = 157/252 (62%), Positives = 195/252 (77%), Gaps = 1/252 (0%)
 Frame = -1

Query: 754 SLNRLNAALLLF-HQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYP 578
           S N LN    LF H I +PH+FI NS+I+AFSHSH P T LS+YS+M+KNSI PNN+T+P
Sbjct: 54  SHNLLNYVSPLFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILPNNFTFP 113

Query: 577 IILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPER 398
            + K+LSD     Q QCV+T   K G++ DIYV NSLL+VY+S G +  C +LFDEMP+R
Sbjct: 114 FLFKSLSDSHDFVQSQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQR 173

Query: 397 DVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIH 218
           DVVSWT++I G RN  KY+DAL  FE+MQ+ GV+PNRVTMV ALSACA+S A+EMGVWI 
Sbjct: 174 DVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWID 233

Query: 217 DYVKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMSEKNIFTWNAVIKGLALAKSGE 38
           D V+RN WE+DVILGT+LIDMY KCG+++ GL V   M EKN+FT N VIKGLALAKS E
Sbjct: 234 DMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLALAKSVE 293

Query: 37  EAVRWFSIMEVE 2
           EA+ WF+ ME++
Sbjct: 294 EALLWFNRMELD 305



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 50/224 (22%), Positives = 105/224 (46%), Gaps = 3/224 (1%)
 Frame = -1

Query: 724 LFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKL 545
           LF ++ +  +     +I  + +      +L ++  M    + PN  T    L   +    
Sbjct: 166 LFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCA 225

Query: 544 IKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDVVSWTILIEG 365
           I+ G  +     + G   D+ +  +L+++Y  CG +    ++F +M E++V +  ++I+G
Sbjct: 226 IEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKG 285

Query: 364 NRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIHDYVKRNEWEV- 188
               +  ++AL  F RM+  GV  + VT+V  LSAC+ SG +E G +I   +   ++   
Sbjct: 286 LALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYGFL 345

Query: 187 -DVILGTSLIDMYGKCGKIDVGLSVLKSMS-EKNIFTWNAVIKG 62
            +V     ++D+  + G++     ++K M  E     W +++ G
Sbjct: 346 PNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLLLG 389


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  312 bits (800), Expect = 4e-83
 Identities = 147/250 (58%), Positives = 188/250 (75%)
 Frame = -1

Query: 751 LNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPII 572
           L+ L +A L F  I +PH+FICNS+I+AFSHS  P T L +Y++MN+NSI PNNYT+P +
Sbjct: 57  LHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFV 116

Query: 571 LKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 392
           LK+L+D K +  GQ VHT   K GH  D+YV N+L++VY+SCG M  C+++FDEM   DV
Sbjct: 117 LKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDV 176

Query: 391 VSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIHDY 212
           VSWTILI G R     DDAL  FE+MQ+ GV PNRVT+V AL+ACA+ GA+EMGVWIH++
Sbjct: 177 VSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEF 236

Query: 211 VKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMSEKNIFTWNAVIKGLALAKSGEEA 32
           VK   WEVDV+LGT+LIDMYGKCG+I   L+V ++M EKN++TWN  I GLA AK GEEA
Sbjct: 237 VKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEA 296

Query: 31  VRWFSIMEVE 2
           + WF  M+ E
Sbjct: 297 IAWFKRMDEE 306



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 41/175 (23%), Positives = 79/175 (45%)
 Frame = -1

Query: 754 SLNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPI 575
           S  ++     +F ++    +     +I  +  S     +L ++  M    + PN  T   
Sbjct: 157 SCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVN 216

Query: 574 ILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERD 395
            L   +    I+ G  +H     +    D+ +  +L+++Y  CG +     +F  M E++
Sbjct: 217 ALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKN 276

Query: 394 VVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMG 230
           V +W + I G  + +  ++A+  F+RM   GV  + VT+V  LSAC+ SG +  G
Sbjct: 277 VYTWNVFINGLASAKCGEEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSG 331


>ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  312 bits (800), Expect = 4e-83
 Identities = 147/250 (58%), Positives = 188/250 (75%)
 Frame = -1

Query: 751 LNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPII 572
           L+ L +A L F  I +PH+FICNS+I+AFSHS  P T L +Y++MN+NSI PNNYT+P +
Sbjct: 57  LHLLGSAFLFFTHIPKPHVFICNSLIRAFSHSKIPHTPLFLYTHMNRNSISPNNYTFPFV 116

Query: 571 LKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDV 392
           LK+L+D K +  GQ VHT   K GH  D+YV N+L++VY+SCG M  C+++FDEM   DV
Sbjct: 117 LKSLADFKDLVGGQSVHTHVVKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDV 176

Query: 391 VSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMGVWIHDY 212
           VSWTILI G R     DDAL  FE+MQ+ GV PNRVT+V AL+ACA+ GA+EMGVWIH++
Sbjct: 177 VSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGAIEMGVWIHEF 236

Query: 211 VKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMSEKNIFTWNAVIKGLALAKSGEEA 32
           VK   WEVDV+LGT+LIDMYGKCG+I   L+V ++M EKN++TWN  I GLA AK GEEA
Sbjct: 237 VKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEA 296

Query: 31  VRWFSIMEVE 2
           + WF  M+ E
Sbjct: 297 IAWFKRMDEE 306



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 6/237 (2%)
 Frame = -1

Query: 754 SLNRLNAALLLFHQIHRPHIFICNSIIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPI 575
           S  ++     +F ++    +     +I  +  S     +L ++  M    + PN  T   
Sbjct: 157 SCGKMGLCKKVFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVN 216

Query: 574 ILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERD 395
            L   +    I+ G  +H     +    D+ +  +L+++Y  CG +     +F  M E++
Sbjct: 217 ALAACASFGAIEMGVWIHEFVKTKRWEVDVVLGTALIDMYGKCGRIKEALAVFQAMKEKN 276

Query: 394 VVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAASGALEMG---VW 224
           V +W + I G  + +  ++A+  F+RM   GV  + VT+V  LSAC+ SG +  G    W
Sbjct: 277 VYTWNVFINGLASAKCGEEAIAWFKRMDEEGVEADDVTLVAVLSACSHSGLVNSGRQIFW 336

Query: 223 --IHDYVKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMS-EKNIFTWNAVIKG 62
             IH    R  +   +   + ++D+  + G I+    ++K M  E     W +++ G
Sbjct: 337 SLIHG---RFGFSPGIKHYSCMVDILARNGCIEEACVMIKDMPFEATRSMWGSLLTG 390


>ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|222861126|gb|EEE98668.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  270 bits (691), Expect = 2e-70
 Identities = 126/206 (61%), Positives = 158/206 (76%)
 Frame = -1

Query: 619 MNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQGHMCDIYVLNSLLNVYSSCGD 440
           M+ NSI PNNYT+P + K+LSD +   + QCVH    + GH+ DIYV NSLL+VY+SCG 
Sbjct: 1   MHYNSILPNNYTFPFLFKSLSDCRDYLKCQCVHAHVIRLGHLNDIYVQNSLLDVYASCGY 60

Query: 439 MHTCERLFDEMPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSA 260
           M  C  +FDEM +RDVVSWT+LI G RN + Y DAL AFE+MQ+ GV+PN VTMV AL A
Sbjct: 61  MGLCREVFDEMSDRDVVSWTVLIMGYRNAKNYADALIAFEKMQYAGVVPNHVTMVNALGA 120

Query: 259 CAASGALEMGVWIHDYVKRNEWEVDVILGTSLIDMYGKCGKIDVGLSVLKSMSEKNIFTW 80
           C +  A+EMGVWIHD++ RN W++DVILGTSL++MY KCG+ID GL+  +SM EKN+FTW
Sbjct: 121 CGSFRAIEMGVWIHDFISRNGWDLDVILGTSLVEMYLKCGRIDEGLNAFRSMKEKNVFTW 180

Query: 79  NAVIKGLALAKSGEEAVRWFSIMEVE 2
           N VI+GL  AKSG+EAV WF+ ME E
Sbjct: 181 NVVIQGLGFAKSGQEAVWWFNRMEEE 206



 Score = 72.8 bits (177), Expect = 7e-11
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 3/209 (1%)
 Frame = -1

Query: 679 IIKAFSHSHSPQTSLSIYSYMNKNSIWPNNYTYPIILKTLSDLKLIKQGQCVHTQTFKQG 500
           +I  + ++ +   +L  +  M    + PN+ T    L      + I+ G  +H    + G
Sbjct: 82  LIMGYRNAKNYADALIAFEKMQYAGVVPNHVTMVNALGACGSFRAIEMGVWIHDFISRNG 141

Query: 499 HMCDIYVLNSLLNVYSSCGDMHTCERLFDEMPERDVVSWTILIEGNRNLRKYDDALFAFE 320
              D+ +  SL+ +Y  CG +      F  M E++V +W ++I+G    +   +A++ F 
Sbjct: 142 WDLDVILGTSLVEMYLKCGRIDEGLNAFRSMKEKNVFTWNVVIQGLGFAKSGQEAVWWFN 201

Query: 319 RMQFLGVLPNRVTMVIALSACAASGALEMGVWIHDYVKRNEWEVDVILG--TSLIDMYGK 146
           RM+  G   + VT+   L+AC  SG ++MG  I   +    +     L     +ID+  +
Sbjct: 202 RMEEEGFEADEVTLANVLNACIHSGLVDMGRQIFSSLINGNYGFSPSLKHYACMIDLLTR 261

Query: 145 CGKIDVGLSVLKSMS-EKNIFTWNAVIKG 62
            G +D    ++K M  E +   W + + G
Sbjct: 262 AGCLDEAFKLIKEMPFEPSKSIWGSFLTG 290