BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024678
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    67   2e-09
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...    65   8e-09
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    64   1e-08
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]              64   2e-08
gb|AAT38805.1| hypothetical protein SDM1_47t00008 [Solanum demis...    62   6e-08

>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 36/102 (35%), Positives = 56/102 (54%)
 Frame = -2

Query: 313 DILIFINGCRESLLLLMDLISKYELCSGQMVNQSKS*CFVHHRVPALLRNAISSAVGIPL 134
           D+++F      SL++L  L ++Y  CSGQ++N  KS  F        + N ++  +G  +
Sbjct: 431 DLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVN-ILGFNV 489

Query: 133 KQMPFTYLGAPIHHGRITSRLFDDLITKVQRRVMGWKAKLLS 8
             +PFTYLGAPI  G+     F  +  KV+ ++  WKA LLS
Sbjct: 490 GSLPFTYLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLS 531


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 33/104 (31%), Positives = 56/104 (53%)
 Frame = -2

Query: 319 AADILIFINGCRESLLLLMDLISKYELCSGQMVNQSKS*CFVHHRVPALLRNAISSAVGI 140
           A D L+F    R+   +++D++++YEL SGQ +N  KS       V    ++ +++ + +
Sbjct: 686 ADDSLLFTRANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNM 745

Query: 139 PLKQMPFTYLGAPIHHGRITSRLFDDLITKVQRRVMGWKAKLLS 8
                   YLG P   GR    +FD LI ++ +++ GWK KLLS
Sbjct: 746 RQVDRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLS 789


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/104 (34%), Positives = 54/104 (51%)
 Frame = -2

Query: 319  AADILIFINGCRESLLLLMDLISKYELCSGQMVNQSKS*CFVHHRVPALLRNAISSAVGI 140
            A D L+F +      + L ++ S YE  SGQ +N+ KS      + PA ++ A S+ + +
Sbjct: 970  ADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKDKSAICFSPKSPAAIKEACSAILDM 1029

Query: 139  PLKQMPFTYLGAPIHHGRITSRLFDDLITKVQRRVMGWKAKLLS 8
            P+      YLG P   G+   +LF  L  +V  RV GW+ KLLS
Sbjct: 1030 PVVPCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVHGWEGKLLS 1073


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/106 (35%), Positives = 57/106 (53%)
 Frame = -2

Query: 319 AADILIFINGCRESLLLLMDLISKYELCSGQMVNQSKS*CFVHHRVPALLRNAISSAVGI 140
           A D L F    +E   +++ ++ +YE  SGQM+N SKS     H+V   ++  I SA+GI
Sbjct: 532 ANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGI 591

Query: 139 PLKQMPFTYLGAPIHHGRITSRLFDDLITKVQRRVMGWKAKLLSSG 2
                  +YLG P   G   +R+F  +  ++Q R+ GW AK LS G
Sbjct: 592 HSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKG 637


>gb|AAT38805.1| hypothetical protein SDM1_47t00008 [Solanum demissum]
          Length = 1155

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/104 (30%), Positives = 56/104 (53%)
 Frame = -2

Query: 313 DILIFINGCRESLLLLMDLISKYELCSGQMVNQSKS*CFVHHRVPALLRNAISSAVGIPL 134
           D ++F NG +E+L + +  +  YE  SGQ++N++KS   V +         I     +  
Sbjct: 605 DTILFCNGSKETLEMFLRTLHIYENTSGQLINKNKSCFSVANNAKQNFIAKIKLITCMNH 664

Query: 133 KQMPFTYLGAPIHHGRITSRLFDDLITKVQRRVMGWKAKLLSSG 2
           ++ P  YLG P+  G+  +  F++L+  +  R+ GW  KLLS+G
Sbjct: 665 QEFPIKYLGCPLISGKKKTSHFNELVKNIINRIKGWHNKLLSTG 708