BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024674
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309013.1| predicted protein [Populus trichocarpa] gi|2...    55   3e-13
ref|XP_002520121.1| pentatricopeptide repeat-containing protein,...    50   4e-11
emb|CBI40106.3| unnamed protein product [Vitis vinifera]               62   6e-08
ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containi...    62   6e-08
emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]    59   4e-07

>ref|XP_002309013.1| predicted protein [Populus trichocarpa] gi|222854989|gb|EEE92536.1|
           predicted protein [Populus trichocarpa]
          Length = 583

 Score = 55.1 bits (131), Expect(2) = 3e-13
 Identities = 35/73 (47%), Positives = 43/73 (58%)
 Frame = -1

Query: 556 TMYSKCCLVEGMEKAFGAIEENDGISWNTVEYQNMCACSLSGDYAMGLKQFEETTMYKGI 377
           TMYSK  L+E  EKAF +IEE D ISWNT     + +CS   D+   L+ F+E  M    
Sbjct: 245 TMYSKLNLLEEAEKAFRSIEEKDLISWNTF----ISSCSHCNDHEKALEAFKE--MLNEC 298

Query: 376 GVRLDDFKFAIAL 338
            VR D+F FA AL
Sbjct: 299 RVRPDEFTFASAL 311



 Score = 45.1 bits (105), Expect(2) = 3e-13
 Identities = 37/98 (37%), Positives = 50/98 (51%)
 Frame = -3

Query: 296 GELIHGPIMKTRLNLDVEVDSAIWRMYAKCGSIGYACYYHFWSNDRCTTLVSWKYGTLT* 117
           G+ IHG +++TRL  DV   +A+  MYAKCG I  A  Y+ +S      LVSW       
Sbjct: 323 GKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKA--YYIFSKMEHQNLVSWNTMIAGF 380

Query: 116 R*HLELKS*IGQKST*YL*ADDENIGT*EPDSFTFIGL 3
             H       G K+   L A  + +G  +PDS TF+GL
Sbjct: 381 GNHG-----FGGKAF-ELFAKMKTMGV-KPDSVTFVGL 411


>ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540613|gb|EEF42176.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 589

 Score = 50.4 bits (119), Expect(2) = 4e-11
 Identities = 31/70 (44%), Positives = 39/70 (55%)
 Frame = -1

Query: 556 TMYSKCCLVEGMEKAFGAIEENDGISWNTVEYQNMCACSLSGDYAMGLKQFEETTMYKGI 377
           TMYSK  L+E  EK FG I+E D ISWNT+    + AC    D+   L+ F +  M    
Sbjct: 245 TMYSKFNLIEEAEKVFGLIKEKDLISWNTL----VTACCFCKDHERALRVFRD--MLDVC 298

Query: 376 GVRLDDFKFA 347
            V+ DDF FA
Sbjct: 299 FVKPDDFTFA 308



 Score = 42.4 bits (98), Expect(2) = 4e-11
 Identities = 25/56 (44%), Positives = 34/56 (60%)
 Frame = -3

Query: 305 IVRGELIHGPIMKTRLNLDVEVDSAIWRMYAKCGSIGYACYYHFWSNDRCTTLVSW 138
           I  G+ IHG +++TR   DV V +A+  MYAKCGSI  +      ++DR   LVSW
Sbjct: 320 IRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDR--NLVSW 373


>emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
 Frame = -1

Query: 556 TMYSKCCLVEGMEKAFGAIEENDGISWNTVEYQNMCACSLSGDYAMGLKQFEETTMYKGI 377
           TMYS+  L++  EKAF  IEE D ISWNT+    + ACS   D+A GL+ F+  T  +  
Sbjct: 245 TMYSELNLIQEAEKAFRLIEEKDVISWNTL----IAACSHCDDHAKGLRVFKHMT--EET 298

Query: 376 GVRLDDFKFAIALDRFLCRGCIYSSYVES*FMVL**RRG*IWTLRLTVPFGACMLNAAA- 200
            VR DDF F  AL    C G    S+ +     L   R     L   +  G  ++N  A 
Sbjct: 299 NVRPDDFTFTSAL--AACAGLASMSHGKQIHAHLMRTR-----LYQDLGVGNALVNMYAK 351

Query: 199 ---LGMHAITIFGRMIDAPLLYHGSMEH*HSDDTWN------*NHRLGRRALNISEQM 53
              +G +A  IF +M+             H+  +WN       NH LG RA+ + EQM
Sbjct: 352 CGCIG-YAYDIFSKMVH------------HNLVSWNTIIAGFGNHGLGERAVELFEQM 396


>ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
 Frame = -1

Query: 556 TMYSKCCLVEGMEKAFGAIEENDGISWNTVEYQNMCACSLSGDYAMGLKQFEETTMYKGI 377
           TMYS+  L++  EKAF  IEE D ISWNT+    + ACS   D+A GL+ F+  T  +  
Sbjct: 245 TMYSELNLIQEAEKAFRLIEEKDVISWNTL----IAACSHCDDHAKGLRVFKHMT--EET 298

Query: 376 GVRLDDFKFAIALDRFLCRGCIYSSYVES*FMVL**RRG*IWTLRLTVPFGACMLNAAA- 200
            VR DDF F  AL    C G    S+ +     L   R     L   +  G  ++N  A 
Sbjct: 299 NVRPDDFTFTSAL--AACAGLASMSHGKQIHAHLMRTR-----LYQDLGVGNALVNMYAK 351

Query: 199 ---LGMHAITIFGRMIDAPLLYHGSMEH*HSDDTWN------*NHRLGRRALNISEQM 53
              +G +A  IF +M+             H+  +WN       NH LG RA+ + EQM
Sbjct: 352 CGCIG-YAYDIFSKMVH------------HNLVSWNTIIAGFGNHGLGERAVELFEQM 396


>emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
          Length = 730

 Score = 59.3 bits (142), Expect = 4e-07
 Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
 Frame = -1

Query: 556 TMYSKCCLVEGMEKAFGAIEENDGISWNTVEYQNMCACSLSGDYAMGLKQFEETTMYKGI 377
           TMYS+  L++  EKAF  IEE D ISWNT+    + ACS   D+A GL+ F+  T  +  
Sbjct: 252 TMYSELNLIQEAEKAFRLIEEKDVISWNTL----IAACSHCDDHAKGLRVFKHMT--EET 305

Query: 376 GVRLDDFKFAIALDRFLCRGCIYSSYVES*FMVL**RRG*IWTLRLTVPFGACMLNAAAL 197
            VR DDF F  AL    C G    S+ +     L  R      L +             +
Sbjct: 306 NVRPDDFTFTSAL--AACAGLASMSHGKQIHAHL-MRTSLYRDLGVDNALVNMYAKCGCI 362

Query: 196 GMHAITIFGRMIDAPLLYHGSMEH*HSDDTWN------*NHRLGRRALNISEQM 53
           G +A  IF +M+             H+  +WN       NH LG RA+ + EQM
Sbjct: 363 G-YAYDIFSKMVH------------HNLVSWNTIIAGFGNHGLGERAVELFEQM 403