BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024669
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   108   2e-35
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [...   107   2e-33
ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-...   100   1e-32
ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-...   100   1e-32
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2...    95   2e-32

>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  108 bits (270), Expect(2) = 2e-35
 Identities = 58/94 (61%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
 Frame = -2

Query: 279 VTHPLCDRTSISARLDAVSEIEESMAP-STKQDGGSVDNEDECVAHVKPLINDVLSSVLT 103
           V+HPLCD   ISARLDAVSEI  SM      Q+ G +D  D  V +V+P +N +LSSVLT
Sbjct: 472 VSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLT 531

Query: 102 TLGMSTDIQRGITRIFHRTGTTSEFIAVVHAILY 1
           TLG S DIQRG+TRIFHRT T SEFI+V  AIL+
Sbjct: 532 TLGRSPDIQRGLTRIFHRTATASEFISVTQAILF 565



 Score = 65.5 bits (158), Expect(2) = 2e-35
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = -1

Query: 391 VEVLRNNSDGSETGSLLHVMNHTLTIFGSRLRKHWV 284
           +EVL N+SDGSE+GSLLH MNHTLTIFGSRL +HWV
Sbjct: 437 LEVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWV 472


>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
           gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
           MSH3, putative [Ricinus communis]
          Length = 1100

 Score =  107 bits (268), Expect(2) = 2e-33
 Identities = 60/93 (64%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
 Frame = -2

Query: 279 VTHPLCDRTSISARLDAVSEIEESMAP-STKQDGGSVDNEDECVAHVKPLINDVLSSVLT 103
           VTHPLCDR  ISARLDAVSEI ESM      Q+ G  D ED  VA ++P    +LS+VL 
Sbjct: 463 VTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLE 522

Query: 102 TLGMSTDIQRGITRIFHRTGTTSEFIAVVHAIL 4
            LG S DIQRGITRIFHRT T SEFIAV+ AIL
Sbjct: 523 MLGRSPDIQRGITRIFHRTATASEFIAVIQAIL 555



 Score = 60.1 bits (144), Expect(2) = 2e-33
 Identities = 26/36 (72%), Positives = 33/36 (91%)
 Frame = -1

Query: 391 VEVLRNNSDGSETGSLLHVMNHTLTIFGSRLRKHWV 284
           +EVLRNNS+GS++GSL ++MNHTLTI GSRL +HWV
Sbjct: 428 LEVLRNNSNGSDSGSLFNIMNHTLTISGSRLLRHWV 463


>ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 1094

 Score =  100 bits (248), Expect(2) = 1e-32
 Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = -2

Query: 279 VTHPLCDRTSISARLDAVSEIEESMAPS-TKQDGGSVDNEDECVAHVKPLINDVLSSVLT 103
           +THPLCDR  I AR +AVSEI  SM  S    +  ++D E   V  ++P +N +LSSVLT
Sbjct: 473 ITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRALDEEYSDVIVIEPELNYILSSVLT 532

Query: 102 TLGMSTDIQRGITRIFHRTGTTSEFIAVVHAILY 1
           TLG + DIQRGITRIFHRT   SEFIAV+ AIL+
Sbjct: 533 TLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILF 566



 Score = 64.7 bits (156), Expect(2) = 1e-32
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -1

Query: 400 LLGVEVLRNNSDGSETGSLLHVMNHTLTIFGSRLRKHWV 284
           L  +EVL+NN DGSETGSLLH MNHTLTIFGSRL + W+
Sbjct: 435 LTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWI 473


>ref|XP_004168537.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 966

 Score =  100 bits (248), Expect(2) = 1e-32
 Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = -2

Query: 279 VTHPLCDRTSISARLDAVSEIEESMAPS-TKQDGGSVDNEDECVAHVKPLINDVLSSVLT 103
           +THPLCDR  I AR +AVSEI  SM  S    +  ++D E   V  ++P +N +LSSVLT
Sbjct: 490 ITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRALDEEYSDVIVIEPELNYILSSVLT 549

Query: 102 TLGMSTDIQRGITRIFHRTGTTSEFIAVVHAILY 1
           TLG + DIQRGITRIFHRT   SEFIAV+ AIL+
Sbjct: 550 TLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILF 583



 Score = 64.7 bits (156), Expect(2) = 1e-32
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -1

Query: 400 LLGVEVLRNNSDGSETGSLLHVMNHTLTIFGSRLRKHWV 284
           L  +EVL+NN DGSETGSLLH MNHTLTIFGSRL + W+
Sbjct: 452 LTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWI 490


>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
           predicted protein [Populus trichocarpa]
          Length = 1092

 Score = 94.7 bits (234), Expect(2) = 2e-32
 Identities = 55/94 (58%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = -2

Query: 279 VTHPLCDRTSISARLDAVSEIEESMAPST-KQDGGSVDNEDECVAHVKPLINDVLSSVLT 103
           VTHPLCDR  ISARLDAVSEI E M  S   Q    +D +D  VA V+P +  +LS+VLT
Sbjct: 447 VTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDEDDSEVAIVQPDLYYLLSAVLT 506

Query: 102 TLGMSTDIQRGITRIFHRTGTTSEFIAVVHAILY 1
            LG S DI+RGITRIFHRT T SEF+ ++  I+Y
Sbjct: 507 ALGRSPDIERGITRIFHRTATASEFL-LMFLIMY 539



 Score = 69.3 bits (168), Expect(2) = 2e-32
 Identities = 30/36 (83%), Positives = 35/36 (97%)
 Frame = -1

Query: 391 VEVLRNNSDGSETGSLLHVMNHTLTIFGSRLRKHWV 284
           +EVLRNNSDGSE+GSLLH+MNHTLTI+GSRL +HWV
Sbjct: 412 LEVLRNNSDGSESGSLLHIMNHTLTIYGSRLLRHWV 447