BLASTX nr result
ID: Coptis21_contig00024668
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00024668
(571 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-... 157 3e-63
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [... 137 3e-56
ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|2... 150 3e-56
ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-... 144 2e-53
gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida] 149 9e-52
>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
Length = 1137
Score = 157 bits (397), Expect(2) = 3e-63
Identities = 76/95 (80%), Positives = 85/95 (89%)
Frame = +1
Query: 4 HLLGVEGIMTMPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQL 183
H L +EGIM+MP LAVQALAL +RHLKQFG ERI+C+GA+ RPF SNMEMTLSANALQQL
Sbjct: 378 HCLAIEGIMSMPDLAVQALALTIRHLKQFGLERILCMGASFRPFSSNMEMTLSANALQQL 437
Query: 184 EVLRNNSDGSETGSLLRAMNHTLTIFGSRLLKHWV 288
EVL N+SDGSE+GSLL MNHTLTIFGSRLL+HWV
Sbjct: 438 EVLNNHSDGSESGSLLHTMNHTLTIFGSRLLRHWV 472
Score = 110 bits (274), Expect(2) = 3e-63
Identities = 61/94 (64%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Frame = +2
Query: 293 VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVEQVKIMINDVLFSVLT 469
V+HPLCD ISARLDAVSEI SM + QN GG+D D V V+ +N +L SVLT
Sbjct: 472 VSHPLCDSNMISARLDAVSEIVMSMGSCKASQNFGGIDEGDSDVTYVQPEVNYLLSSVLT 531
Query: 470 TLGRSTDIQRGITRIFHRTATASEFIVVVHAILY 571
TLGRS DIQRG+TRIFHRTATASEFI V AIL+
Sbjct: 532 TLGRSPDIQRGLTRIFHRTATASEFISVTQAILF 565
>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
MSH3, putative [Ricinus communis]
Length = 1100
Score = 137 bits (345), Expect(2) = 3e-56
Identities = 68/93 (73%), Positives = 78/93 (83%)
Frame = +1
Query: 10 LGVEGIMTMPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEV 189
L +EGIM MP LAVQALAL + HLKQFGFE+I+ LGA+ RP SN+EM LSAN LQQLEV
Sbjct: 371 LAIEGIMNMPDLAVQALALTISHLKQFGFEQILRLGASFRPLTSNVEMNLSANTLQQLEV 430
Query: 190 LRNNSDGSETGSLLRAMNHTLTIFGSRLLKHWV 288
LRNNS+GS++GSL MNHTLTI GSRLL+HWV
Sbjct: 431 LRNNSNGSDSGSLFNIMNHTLTISGSRLLRHWV 463
Score = 107 bits (266), Expect(2) = 3e-56
Identities = 61/93 (65%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 293 VTHPLCDRTSISARLDAVSEIAESM-TPSTKQNGGGVDNEDECVEQVKIMINDVLFSVLT 469
VTHPLCDR ISARLDAVSEIAESM + QN G D ED V ++ +L +VL
Sbjct: 463 VTHPLCDRNMISARLDAVSEIAESMGSYKALQNTGDFDEEDSDVAIIQPDFYHLLSTVLE 522
Query: 470 TLGRSTDIQRGITRIFHRTATASEFIVVVHAIL 568
LGRS DIQRGITRIFHRTATASEFI V+ AIL
Sbjct: 523 MLGRSPDIQRGITRIFHRTATASEFIAVIQAIL 555
>ref|XP_002322465.1| predicted protein [Populus trichocarpa] gi|222869461|gb|EEF06592.1|
predicted protein [Populus trichocarpa]
Length = 1092
Score = 150 bits (379), Expect(2) = 3e-56
Identities = 71/93 (76%), Positives = 83/93 (89%)
Frame = +1
Query: 10 LGVEGIMTMPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEV 189
L +EG++ MP LAV+ALAL +RHLKQFGF+R++CLGA+ RPF SNMEM LSAN LQQLEV
Sbjct: 355 LAIEGVIKMPDLAVEALALTVRHLKQFGFDRMLCLGASFRPFSSNMEMNLSANTLQQLEV 414
Query: 190 LRNNSDGSETGSLLRAMNHTLTIFGSRLLKHWV 288
LRNNSDGSE+GSLL MNHTLTI+GSRLL+HWV
Sbjct: 415 LRNNSDGSESGSLLHIMNHTLTIYGSRLLRHWV 447
Score = 94.0 bits (232), Expect(2) = 3e-56
Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +2
Query: 293 VTHPLCDRTSISARLDAVSEIAESMTPST-KQNGGGVDNEDECVEQVKIMINDVLFSVLT 469
VTHPLCDR ISARLDAVSEIAE M S Q +D +D V V+ + +L +VLT
Sbjct: 447 VTHPLCDRNMISARLDAVSEIAECMGFSKDSQRVSELDEDDSEVAIVQPDLYYLLSAVLT 506
Query: 470 TLGRSTDIQRGITRIFHRTATASEFIVV 553
LGRS DI+RGITRIFHRTATASEF+++
Sbjct: 507 ALGRSPDIERGITRIFHRTATASEFLLM 534
>ref|XP_003556101.1| PREDICTED: DNA mismatch repair protein Msh3-like [Glycine max]
Length = 1070
Score = 144 bits (364), Expect(2) = 2e-53
Identities = 70/91 (76%), Positives = 81/91 (89%)
Frame = +1
Query: 16 VEGIMTMPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVLR 195
++ +M MP LAVQALAL +RHLK+FGFERI+C GA++RPF SN EMTLSANALQQLEVL+
Sbjct: 356 IKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASIRPFSSNTEMTLSANALQQLEVLK 415
Query: 196 NNSDGSETGSLLRAMNHTLTIFGSRLLKHWV 288
NNSDGSE GSLL+ MN TLTIFGSRLL+HWV
Sbjct: 416 NNSDGSEIGSLLQIMNRTLTIFGSRLLRHWV 446
Score = 90.1 bits (222), Expect(2) = 2e-53
Identities = 53/92 (57%), Positives = 61/92 (66%)
Frame = +2
Query: 293 VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVEQVKIMINDVLFSVLTT 472
V+HPLCD+T ISARL AVSEIA+SM ED V V+ + L VLTT
Sbjct: 446 VSHPLCDQTLISARLHAVSEIAQSMGSCNSVKNLVRVEEDPDVAIVQPELAYTLSLVLTT 505
Query: 473 LGRSTDIQRGITRIFHRTATASEFIVVVHAIL 568
LGR+ DIQRGITRIFH TAT SEF+ V+ AIL
Sbjct: 506 LGRAPDIQRGITRIFHCTATPSEFVAVIQAIL 537
>gb|AAT67046.1| DNA mismatch repair protein [Petunia x hybrida]
Length = 846
Score = 149 bits (375), Expect(2) = 9e-52
Identities = 70/91 (76%), Positives = 82/91 (90%)
Frame = +1
Query: 16 VEGIMTMPGLAVQALALIMRHLKQFGFERIMCLGATLRPFYSNMEMTLSANALQQLEVLR 195
++GI+ MP LAVQALALI+RHLKQFG ER++CLGA+ RPF SNMEMTLSANALQQLEVL+
Sbjct: 118 IQGILAMPDLAVQALALIIRHLKQFGMERVLCLGASFRPFSSNMEMTLSANALQQLEVLK 177
Query: 196 NNSDGSETGSLLRAMNHTLTIFGSRLLKHWV 288
NN DGSE+GSL+ MN TLT+FGSRLL+HWV
Sbjct: 178 NNFDGSESGSLMHCMNQTLTVFGSRLLRHWV 208
Score = 80.5 bits (197), Expect(2) = 9e-52
Identities = 50/92 (54%), Positives = 64/92 (69%)
Frame = +2
Query: 293 VTHPLCDRTSISARLDAVSEIAESMTPSTKQNGGGVDNEDECVEQVKIMINDVLFSVLTT 472
VTHPL DR I ARLDAV+EIA+SM + + + V+ D + Q +I + ++ S L++
Sbjct: 208 VTHPLRDRNMIDARLDAVAEIADSMK-TCQTSDLKVEGADVTISQPEI--HHLISSALSS 264
Query: 473 LGRSTDIQRGITRIFHRTATASEFIVVVHAIL 568
LGRS DIQRGITRIFHR ATASE V+ AIL
Sbjct: 265 LGRSPDIQRGITRIFHRNATASE---VIQAIL 293