BLASTX nr result
ID: Coptis21_contig00024667
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00024667
(821 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 63 9e-24
emb|CAN79190.1| hypothetical protein VITISV_000232 [Vitis vinifera] 52 4e-18
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 57 5e-18
emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera] 66 8e-18
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 57 9e-18
>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
H; Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 63.2 bits (152), Expect(3) = 9e-24
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Frame = -1
Query: 749 WSATACMTLP-----RLCSNHNPLLLCFDKGSSFPSP-FKFQSAWLLHDDLRRVVKEVWS 588
W +++C L R S+H+PLL+ D +S S FKF W H+D RR+V E WS
Sbjct: 209 WRSSSCSALGNSALVRHQSDHHPLLMSMDFCTSQRSGNFKFFKTWTEHEDCRRIVAENWS 268
Query: 587 KEFYGCPMFIAMQKLKALKKELKVWNGEVFGDIN 486
K G M KLK +K+ + WN VFGD++
Sbjct: 269 KHTRGHGMTRLQAKLKHMKQVFRHWNRTVFGDVD 302
Score = 62.8 bits (151), Expect(3) = 9e-24
Identities = 33/97 (34%), Positives = 49/97 (50%)
Frame = -2
Query: 421 DVFFIYELTCKIELDEVLKMQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPKKKILFL 242
D + EL + L + L Q+ LWR+K R DR AYFH K++A K I FL
Sbjct: 326 DQLYAQELEAHLILTKALHYQDELWREKLRDQRFIHGDRNTAYFHRISKVRATKNTISFL 385
Query: 241 KHEDDQLDG*TAVKNHILQFYQSFYSSPNECINKGLV 131
+ D + ++ H+L ++Q+ +S N CI LV
Sbjct: 386 QDGDAVITDPARIEVHVLNYFQAIFSVDNSCIQNDLV 422
Score = 30.8 bits (68), Expect(3) = 9e-24
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 113 VTSEENAKLTVIPDEDEIRATVFYMDPSSSPGPDGFG 3
V++ +N L +P E++ VF ++ +PGP+GFG
Sbjct: 430 VSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFG 466
>emb|CAN79190.1| hypothetical protein VITISV_000232 [Vitis vinifera]
Length = 1935
Score = 52.4 bits (124), Expect(3) = 4e-18
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = -1
Query: 725 LPRLCSNHNPLLLCFDKGSSFPSPFKFQSAWLLHDDLRRVVKEVWSKEFY--GCPMFIAM 552
LPR S+H P++L + P+PF+F++ WL H + W +EF G M
Sbjct: 944 LPRWTSDHWPIVLETNPFKXGPTPFRFENMWLHHPSFKESFGS-WWREFQGDGWEGHKFM 1002
Query: 551 QKLKALKKELKVWNGEVFGDI 489
+KL+ LK +LK WN FGD+
Sbjct: 1003 RKLQFLKAKLKEWNKNAFGDL 1023
Score = 50.8 bits (120), Expect(3) = 4e-18
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = -2
Query: 391 KIELDEVLKMQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPKKKILFLKHEDD-QLDG 215
K EL+E++ +E WR K+R W+K+ D +FH + +K I L++E LD
Sbjct: 1058 KGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDN 1117
Query: 214 *TAVKNHILQFYQSFYSSPN 155
++K IL++++ Y+SP+
Sbjct: 1118 SDSIKEEILRYFEKLYASPS 1137
Score = 34.3 bits (77), Expect(3) = 4e-18
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 113 VTSEENAKLTVIPDEDEIRATVFYMDPSSSPGPDGF 6
++SE ++L E+EI +F MD +PGPDGF
Sbjct: 1151 ISSESASRLESPFTEEEISKAIFQMDRDKAPGPDGF 1186
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 57.0 bits (136), Expect(3) = 5e-18
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = -2
Query: 385 ELDEVLKMQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPKKKILFLKHEDDQLDG*TA 206
EL+EVL +E LW K+RT W+++ DR ++H S IK + ++ FLK + D
Sbjct: 861 ELNEVLVQEETLWFQKARTDWIRNGDRNTTFYHRSALIKRNRNRVRFLKLQGAWTDDADL 920
Query: 205 VKNHILQFYQSFY 167
+ HI+ F+ + +
Sbjct: 921 LTEHIINFFSTLF 933
Score = 54.3 bits (129), Expect(3) = 5e-18
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Frame = -1
Query: 749 WSATACMT--------LPRLCSNHNPLLLCFDKGSSFPS----PFKFQSAWLLHDDLRRV 606
W+ +A +T LPRLCS+HNP+L D+ + P P +F++AWL +D + +
Sbjct: 733 WNVSAQLTFPEAKVSVLPRLCSDHNPILF-LDEAGNPPDRSLRPVRFEAAWLTSEDYKHI 791
Query: 605 VKEVWSKEFYGCPMFIAMQKLKALKKELKVWNGEVFGDI 489
KE +E IA K+L +WN VFG+I
Sbjct: 792 WKEATEREGSNLEDIIATATQKSL-----LWNRNVFGNI 825
Score = 25.8 bits (55), Expect(3) = 5e-18
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 68 DEIRATVFYMDPSSSPGPDG 9
+E++ VF M SPGPDG
Sbjct: 968 EEVKKAVFGMKKYGSPGPDG 987
>emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera]
Length = 4128
Score = 66.2 bits (160), Expect(3) = 8e-18
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = -1
Query: 749 WSATACMTLPRLCSNHNPLLLCFDKGSSFPSPFKFQSAWLLHDDLRRVVKEVWS-KEFYG 573
+SA + LPRL S+H+P++L SS SPF+F++ WL + + +VK W+ G
Sbjct: 2613 FSAISQSALPRLVSDHSPIILEAGGFSSGKSPFRFENMWLKIEGFKDLVKSWWNGYSVEG 2672
Query: 572 CPMFIAMQKLKALKKELKVWNGEVFGDIN 486
+KLKALKK+LK WN EV G+++
Sbjct: 2673 FSSHCIAEKLKALKKDLKKWNKEVVGNVS 2701
Score = 45.1 bits (105), Expect(3) = 8e-18
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -2
Query: 388 IELDEVLK---MQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPKKKILFLKHEDDQLD 218
++L+E K ++E WR KSR WL++ D+ YFH +A + + +K L
Sbjct: 2733 LDLEEYKKWALLEETSWRQKSREIWLREGDKNTKYFHKMANARARRNFLSKIKVNGVYLS 2792
Query: 217 G*TAVKNHILQFYQSFYSSPNE 152
+K + YQ+ S P +
Sbjct: 2793 SLAEIKEGVCNAYQTLLSDPGD 2814
Score = 25.0 bits (53), Expect(3) = 8e-18
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 95 AKLTVIPDEDEIRATVFYMDPSSSPGPDGF 6
+ L V+ E+EI A + +PGPDGF
Sbjct: 2833 SSLEVMFSEEEIFAALSSFCGDKAPGPDGF 2862
Score = 40.4 bits (93), Expect(2) = 8e-06
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 385 ELDEVLKMQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPK 260
E + + M+E WR KSR TWLK+ D+ +FH +A K
Sbjct: 1149 EYKKCVLMEETFWRQKSRETWLKEGDKNTKFFHKMXNARARK 1190
Score = 35.4 bits (80), Expect(2) = 8e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -1
Query: 587 KEFYGCPMFIAMQKLKALKKELKVWNGEVFGDIN 486
KEF +KLK+LK++L+ WN EVFG+++
Sbjct: 1080 KEFQRSTSHCLAEKLKSLKRDLRRWNKEVFGNVS 1113
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 57.0 bits (136), Expect(3) = 9e-18
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = -2
Query: 385 ELDEVLKMQEALWRDKSRTTWLKDVDRCPAYFHNSVKIKAPKKKILFLKHEDDQLDG*TA 206
EL+EVL +E LW K+RT W+++ DR ++H S IK + ++ FLK + D
Sbjct: 329 ELNEVLVQEETLWFQKARTDWIRNGDRNTTFYHRSALIKRNRNRVRFLKLQGAWTDDADL 388
Query: 205 VKNHILQFYQSFY 167
+ HI+ F+ + +
Sbjct: 389 LTEHIINFFSTLF 401
Score = 53.5 bits (127), Expect(3) = 9e-18
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Frame = -1
Query: 749 WSATACMT--------LPRLCSNHNPLLLCFDKGS---SFPSPFKFQSAWLLHDDLRRVV 603
W+ +A +T LPRLCS+HNP+L + G+ P +F++AWL +D + +
Sbjct: 201 WNVSAQLTFPEAKVSVLPRLCSDHNPILFLDEAGNPPVRSLRPVRFEAAWLTSEDYKHIW 260
Query: 602 KEVWSKEFYGCPMFIAMQKLKALKKELKVWNGEVFGDI 489
KE +E IA K+L +WN VFG+I
Sbjct: 261 KEATEREGSNLEDIIATVTQKSL-----LWNRNVFGNI 293
Score = 25.8 bits (55), Expect(3) = 9e-18
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 68 DEIRATVFYMDPSSSPGPDG 9
+E++ VF M SPGPDG
Sbjct: 436 EEVKKAVFGMKKYGSPGPDG 455