BLASTX nr result

ID: Coptis21_contig00024618 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024618
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632287.1| PREDICTED: uncharacterized protein LOC100854...    94   1e-17
emb|CBI28258.3| unnamed protein product [Vitis vinifera]               94   1e-17
gb|ACN40518.1| unknown [Picea sitchensis]                              93   3e-17
gb|ACG39745.1| brain acid soluble protein 1 [Zea mays] gi|219886...    91   7e-17
ref|NP_001105174.1| methyl binding domain [Zea mays] gi|13936308...    91   7e-17

>ref|XP_003632287.1| PREDICTED: uncharacterized protein LOC100854423 [Vitis vinifera]
          Length = 288

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 39/54 (72%), Positives = 50/54 (92%)
 Frame = +1

Query: 1   GTSRRNEIVFISPTSEEIKNKRQLEQFLRTHPGGPTLAEFDWGTGDTPRRSSRI 162
           GT RRNEI+F+SPT EEIKN+ QL++FL++HPGGP+ +EFDWGTGD+PRRS+RI
Sbjct: 14  GTPRRNEIIFVSPTGEEIKNRSQLDRFLKSHPGGPSCSEFDWGTGDSPRRSARI 67


>emb|CBI28258.3| unnamed protein product [Vitis vinifera]
          Length = 315

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 39/54 (72%), Positives = 50/54 (92%)
 Frame = +1

Query: 1   GTSRRNEIVFISPTSEEIKNKRQLEQFLRTHPGGPTLAEFDWGTGDTPRRSSRI 162
           GT RRNEI+F+SPT EEIKN+ QL++FL++HPGGP+ +EFDWGTGD+PRRS+RI
Sbjct: 41  GTPRRNEIIFVSPTGEEIKNRSQLDRFLKSHPGGPSCSEFDWGTGDSPRRSARI 94


>gb|ACN40518.1| unknown [Picea sitchensis]
          Length = 345

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 38/54 (70%), Positives = 48/54 (88%)
 Frame = +1

Query: 1   GTSRRNEIVFISPTSEEIKNKRQLEQFLRTHPGGPTLAEFDWGTGDTPRRSSRI 162
           GT +RNEI+FI+PT EEIKN+RQL Q+L+ HPGGP + EF+WGTGDTPRRS+R+
Sbjct: 49  GTPKRNEIIFIAPTGEEIKNRRQLSQYLKAHPGGPDITEFEWGTGDTPRRSARL 102


>gb|ACG39745.1| brain acid soluble protein 1 [Zea mays] gi|219886197|gb|ACL53473.1|
           unknown [Zea mays]
          Length = 448

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 39/50 (78%), Positives = 46/50 (92%)
 Frame = +1

Query: 13  RNEIVFISPTSEEIKNKRQLEQFLRTHPGGPTLAEFDWGTGDTPRRSSRI 162
           R+EIVF+SPT EEIKNKRQL Q+L+ HPGGP ++EFDWGTGDTPRRS+RI
Sbjct: 33  RSEIVFVSPTGEEIKNKRQLSQYLKAHPGGPAVSEFDWGTGDTPRRSARI 82


>ref|NP_001105174.1| methyl binding domain [Zea mays] gi|13936308|gb|AAK40307.1|
           putative methyl-binding domain protein MBD105 [Zea mays]
          Length = 433

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 39/50 (78%), Positives = 46/50 (92%)
 Frame = +1

Query: 13  RNEIVFISPTSEEIKNKRQLEQFLRTHPGGPTLAEFDWGTGDTPRRSSRI 162
           R+EIVF+SPT EEIKNKRQL Q+L+ HPGGP ++EFDWGTGDTPRRS+RI
Sbjct: 18  RSEIVFVSPTGEEIKNKRQLSQYLKAHPGGPAVSEFDWGTGDTPRRSARI 67


Top