BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024611
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003398903.1| PREDICTED: DNA topoisomerase 1-like [Bombus ...    57   4e-06

>ref|XP_003398903.1| PREDICTED: DNA topoisomerase 1-like [Bombus terrestris]
          Length = 1027

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
 Frame = -1

Query: 717 H*EENIDYDMSRLH-----NMEKSKSSKFSHPSEDR-------KVTSKRIFENDLLPK-- 580
           H  E+ D D  R H     + E+SK    +H S+ R       K +S  I E D      
Sbjct: 46  HKSEHRDKDKERSHKSDHKDKERSKEKDRNHKSDHREKEKDRHKHSSSSIKEKDKHDSSS 105

Query: 579 ----KEKDLMTNTSEKINQEGKGNDHTSRLHNIDKSKSSKFYHRSVERKTSKRLLDKDLP 412
               K+KD  +N+S   ++E K +  +S+    DKSK  + YHRS    +SK   DKD  
Sbjct: 106 SNKDKDKDRKSNSSSSKDKEHKSSSSSSKDREKDKSKDKEHYHRSSSSSSSK---DKDRH 162

Query: 411 PKNVEPLTTVATEKSNGSSGNCQIENFQNNS-SETSNQEVKGDNHTSSLHNVDKSKS-PN 238
             + +   +   +K      +    N  ++S  +  ++ V  D      H+++K K   +
Sbjct: 163 HSSSKDKESKEKDKEKSKDKDKYKHNISSSSRDKDKDKNVSKDKEKERKHSLEKDKERHS 222

Query: 237 VSHTSEEREHTST 199
            SH +++ +H S+
Sbjct: 223 TSHANDKEKHRSS 235