BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024592
         (1109 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   405   e-110
ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|2...   404   e-110
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   390   e-106
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ...   388   e-105
ref|XP_003601071.1| General transcription factor IIH subunit [Me...   380   e-103

>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  405 bits (1040), Expect = e-110
 Identities = 199/239 (83%), Positives = 215/239 (89%)
 Frame = +2

Query: 2   ISNSEDRGVDPADLISFLLELSFHVTGEAYNVNTMTDVQRSTIKDLADLGLVKLQQGRKE 181
           ISNSE+RGVDPADLISFLLELSFHVTGEAYN+NT+T+ QR+TIKDL DLGLVKLQQGRKE
Sbjct: 213 ISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKE 272

Query: 182 SWFIPTKLVTNXXXXXXXXXXRKQGFVVVETNFRTYAYSTSKLHCEILRLFSRVEYQLPN 361
           SWFIPTKL TN          RKQGFVVVETNFR YAYS+SKLHCEILRLFSRVEYQLPN
Sbjct: 273 SWFIPTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPN 332

Query: 362 LIVGAITKENLYTAFENGITSEQIISFLQQNAHPRVAEKTPSVPENVTDQIRLWEADLNR 541
           LIVGAITKE+LY AFENGIT+EQIISFLQQNAHPRVAE+TP+VPENVTDQIRLWE DLNR
Sbjct: 333 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAERTPAVPENVTDQIRLWETDLNR 392

Query: 542 VEITPSYFYDEFPSRDVFESSCDYARDNGGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 718
           VE  PS+ YDEFPSRDVFE++CD+AR+ GGLLWEDSKKM LVVKAEIH+ MREYLR  K
Sbjct: 393 VETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLRRSK 451


>ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|222848108|gb|EEE85655.1|
           predicted protein [Populus trichocarpa]
          Length = 449

 Score =  404 bits (1037), Expect = e-110
 Identities = 196/239 (82%), Positives = 219/239 (91%)
 Frame = +2

Query: 2   ISNSEDRGVDPADLISFLLELSFHVTGEAYNVNTMTDVQRSTIKDLADLGLVKLQQGRKE 181
           I+NSE+RG +PADLISFLLELSFHVTGEAYN+NT+T++QR+TIKDLA+LGLVKLQQGRKE
Sbjct: 211 ITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKE 270

Query: 182 SWFIPTKLVTNXXXXXXXXXXRKQGFVVVETNFRTYAYSTSKLHCEILRLFSRVEYQLPN 361
           SWFIPTKL TN          RKQG+VVVETNFR YAYS+SKLHCEILRLFS++EYQLPN
Sbjct: 271 SWFIPTKLATNLSVSLTDSSSRKQGYVVVETNFRLYAYSSSKLHCEILRLFSKIEYQLPN 330

Query: 362 LIVGAITKENLYTAFENGITSEQIISFLQQNAHPRVAEKTPSVPENVTDQIRLWEADLNR 541
           LIVGAITKE+LYTAFENGITS+QIISFLQQNAHPRVAE+ PSVPENVTDQIRLWEADLNR
Sbjct: 331 LIVGAITKESLYTAFENGITSDQIISFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNR 390

Query: 542 VEITPSYFYDEFPSRDVFESSCDYARDNGGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 718
           VEITPS+FYDEFPSRD FE++CD+AR+  GLLWEDSKKM +VVKAEIHM MRE+LR QK
Sbjct: 391 VEITPSHFYDEFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQK 449


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score =  390 bits (1001), Expect = e-106
 Identities = 189/239 (79%), Positives = 215/239 (89%)
 Frame = +2

Query: 2   ISNSEDRGVDPADLISFLLELSFHVTGEAYNVNTMTDVQRSTIKDLADLGLVKLQQGRKE 181
           ISNSE+RG+D ADLISFLLELSFH+TGEAYN+  +T+ QR+ IKDLADLGLVKLQQGRKE
Sbjct: 213 ISNSEERGLDSADLISFLLELSFHITGEAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKE 272

Query: 182 SWFIPTKLVTNXXXXXXXXXXRKQGFVVVETNFRTYAYSTSKLHCEILRLFSRVEYQLPN 361
           SWFIPTKL TN          RKQGFVVVETNFR YAYSTSKLHCEI+RLFSRVEYQLPN
Sbjct: 273 SWFIPTKLATNLSMSLTDSSSRKQGFVVVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPN 332

Query: 362 LIVGAITKENLYTAFENGITSEQIISFLQQNAHPRVAEKTPSVPENVTDQIRLWEADLNR 541
           L+VGA+TKE+LY+AFENGIT+EQIISFLQQNAHPRVAE+ PSVPENVTDQIRLWE+D+NR
Sbjct: 333 LVVGAMTKESLYSAFENGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDMNR 392

Query: 542 VEITPSYFYDEFPSRDVFESSCDYARDNGGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 718
           VE+TP++ YDEFPSRDVFE++C++ARD  GLLWEDSK+M +VVKAEIH+ MREYLR QK
Sbjct: 393 VEMTPAHLYDEFPSRDVFEAACNFARDWNGLLWEDSKRMRMVVKAEIHLNMREYLRGQK 451


>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
           sativus]
          Length = 451

 Score =  388 bits (997), Expect = e-105
 Identities = 189/239 (79%), Positives = 214/239 (89%)
 Frame = +2

Query: 2   ISNSEDRGVDPADLISFLLELSFHVTGEAYNVNTMTDVQRSTIKDLADLGLVKLQQGRKE 181
           ISN+E+RGVDPADLISFLLELSFHVTGEAY+++T++D QR  IKDLADLGLVKLQQGRKE
Sbjct: 213 ISNAEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKE 272

Query: 182 SWFIPTKLVTNXXXXXXXXXXRKQGFVVVETNFRTYAYSTSKLHCEILRLFSRVEYQLPN 361
           SWFIPTKL TN          RK GFVVVETNFR YAYSTSKLHCEILRLFSR+EYQLPN
Sbjct: 273 SWFIPTKLATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPN 332

Query: 362 LIVGAITKENLYTAFENGITSEQIISFLQQNAHPRVAEKTPSVPENVTDQIRLWEADLNR 541
           LIVGAITKE+LY AF+NGIT+EQI++FLQQNAHPRVAE+ PSVPENVTDQIRLWE+DLNR
Sbjct: 333 LIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNR 392

Query: 542 VEITPSYFYDEFPSRDVFESSCDYARDNGGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 718
           V+ITP++FYDEFPSR+VFE++CDYAR+  GLLWEDSK + LVVKA+IH  MRE+LR QK
Sbjct: 393 VDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451


>ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490119|gb|AES71322.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 452

 Score =  380 bits (975), Expect = e-103
 Identities = 183/239 (76%), Positives = 211/239 (88%)
 Frame = +2

Query: 2   ISNSEDRGVDPADLISFLLELSFHVTGEAYNVNTMTDVQRSTIKDLADLGLVKLQQGRKE 181
           I+NSE+RGVD  DLISF+LELSFHV GEAYN+NT+T+ QR+ IKDLADLGLVKLQQGRKE
Sbjct: 214 ITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKE 273

Query: 182 SWFIPTKLVTNXXXXXXXXXXRKQGFVVVETNFRTYAYSTSKLHCEILRLFSRVEYQLPN 361
           SWFIPTKL TN          RK+GFVVVETNFR YAYSTSKLHCEILRLFSRVEYQLPN
Sbjct: 274 SWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPN 333

Query: 362 LIVGAITKENLYTAFENGITSEQIISFLQQNAHPRVAEKTPSVPENVTDQIRLWEADLNR 541
           LIVGAITKE+LY AF+NGIT++QI+SFL+QNAHPRVA++ P+VPENVTDQIRLWE+DLNR
Sbjct: 334 LIVGAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNR 393

Query: 542 VEITPSYFYDEFPSRDVFESSCDYARDNGGLLWEDSKKMLLVVKAEIHMQMREYLRSQK 718
           VE+T +Y+YDEFPSRDVFE +CD AR+  GLLWEDSKKM LVVK+E+H  +R++LR QK
Sbjct: 394 VEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQK 452