BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024539
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]   114   2e-29
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi...   114   2e-29
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar...   116   2e-27
ref|XP_002866679.1| pentatricopeptide repeat-containing protein ...   115   9e-27
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi...   107   8e-25

>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  114 bits (286), Expect(2) = 2e-29
 Identities = 55/84 (65%), Positives = 67/84 (79%)
 Frame = +2

Query: 113 ILMSLARVLLIDDMKQVYLEMLDNKICPNIYTFNTMVNVYCKVWDIEKARIYVGKITHAG 292
           ILMSL++ LLID+MK VYLE+L+N+I PNIYTFN MVN YCK+ ++ +A +Y  KI  AG
Sbjct: 165 ILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG 224

Query: 293 LCPDKFTYTSLILGYYRRKDVDNA 364
           L PD FTYTSLILG+ R K VDNA
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNA 248



 Score = 39.7 bits (91), Expect(2) = 2e-29
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   IKSCKSMEDCKYVLTELRKLSS-GECGFKFTLKCYNYI 113
           IKSC S+ED  +VL   RK+++ GE  FK TL+CYN I
Sbjct: 128 IKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI 165


>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
           protein product [Vitis vinifera]
          Length = 890

 Score =  114 bits (286), Expect(2) = 2e-29
 Identities = 55/84 (65%), Positives = 67/84 (79%)
 Frame = +2

Query: 113 ILMSLARVLLIDDMKQVYLEMLDNKICPNIYTFNTMVNVYCKVWDIEKARIYVGKITHAG 292
           ILMSL++ LLID+MK VYLE+L+N+I PNIYTFN MVN YCK+ ++ +A +Y  KI  AG
Sbjct: 165 ILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG 224

Query: 293 LCPDKFTYTSLILGYYRRKDVDNA 364
           L PD FTYTSLILG+ R K VDNA
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNA 248



 Score = 39.7 bits (91), Expect(2) = 2e-29
 Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +3

Query: 3   IKSCKSMEDCKYVLTELRKLSS-GECGFKFTLKCYNYI 113
           IKSC S+ED  +VL   RK+++ GE  FK TL+CYN I
Sbjct: 128 IKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI 165


>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|110737310|dbj|BAF00601.1| hypothetical protein
           [Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 915

 Score =  116 bits (291), Expect(2) = 2e-27
 Identities = 54/84 (64%), Positives = 70/84 (83%)
 Frame = +2

Query: 113 ILMSLARVLLIDDMKQVYLEMLDNKICPNIYTFNTMVNVYCKVWDIEKARIYVGKITHAG 292
           +L SLAR  L+D+MKQVY+EML++K+CPNIYT+N MVN YCK+ ++E+A  YV KI  AG
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248

Query: 293 LCPDKFTYTSLILGYYRRKDVDNA 364
           L PD FTYTSLI+GY +RKD+D+A
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSA 272



 Score = 30.4 bits (67), Expect(2) = 2e-27
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 3   IKSCKSMEDCKYVLTELRKLSSG---ECGFKFTLKCYN 107
           IKSC S+ D  YVL   RK++     E  +K  + CYN
Sbjct: 150 IKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYN 187


>ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312514|gb|EFH42938.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 915

 Score =  115 bits (288), Expect(2) = 9e-27
 Identities = 54/84 (64%), Positives = 69/84 (82%)
 Frame = +2

Query: 113 ILMSLARVLLIDDMKQVYLEMLDNKICPNIYTFNTMVNVYCKVWDIEKARIYVGKITHAG 292
           +L SLAR  L+D+MKQVY+EML++K+CPNIYT+N MVN YCKV ++E+A  YV  I  AG
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAG 248

Query: 293 LCPDKFTYTSLILGYYRRKDVDNA 364
           L PD FTYTSLI+GY +RKD+D+A
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSA 272



 Score = 29.6 bits (65), Expect(2) = 9e-27
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 3   IKSCKSMEDCKYVLTELRKLS---SGECGFKFTLKCYN 107
           IKSC S+ D  +VL   RK++   S E  +K  + CYN
Sbjct: 150 IKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGCYN 187


>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
           gi|449522905|ref|XP_004168466.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  107 bits (268), Expect(2) = 8e-25
 Identities = 52/84 (61%), Positives = 65/84 (77%)
 Frame = +2

Query: 113 ILMSLARVLLIDDMKQVYLEMLDNKICPNIYTFNTMVNVYCKVWDIEKARIYVGKITHAG 292
           +LM L+R L+ID+MK VYLEMLD+ + PNI+T NTMVN YCK+ ++ +A +YV KI  AG
Sbjct: 175 LLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAG 234

Query: 293 LCPDKFTYTSLILGYYRRKDVDNA 364
           L  D FTYTSLILGY R K+VD A
Sbjct: 235 LSLDTFTYTSLILGYCRNKNVDAA 258



 Score = 30.8 bits (68), Expect(2) = 8e-25
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   IKSCKSMEDCKYVLTELRKLSSGECGFKF--TLKCYNYI 113
           IKS  S E+  +VL  LR ++     FKF  TL+CYN +
Sbjct: 137 IKSTDSSENALFVLEMLRSMNRRVDAFKFKLTLRCYNML 175