BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024422
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...    66   3e-09
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...    65   4e-09
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...    64   1e-08
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...    64   1e-08
gb|AAZ32871.1| unknown [Medicago sativa]                               63   3e-08

>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
           gi|222859693|gb|EEE97240.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 664

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
 Frame = -3

Query: 241 GCDPFSRRWTKSRNYFIFNPVTKD----------------SKNGHVVAASLESGGVNAAA 110
           G DPFSRRWT+SRNY++ NP   D                + + HVVA ++   GV A A
Sbjct: 513 GYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEANDTAALADSDHVVAGAISESGVAATA 572

Query: 109 GLADVAVFPPIAAAGAWKLVDTKSPVDQG 23
              D       AAA A KLVDT +PVDQG
Sbjct: 573 AALD-------AAADAGKLVDTSAPVDQG 594


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 41/80 (51%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
 Frame = -3

Query: 241 GCDPFSRRWTKSRNYFIFNPVTK-----DSKNGHVVAASLESGG--VNAAAGLADVAVFP 83
           G DPFSRRWT+SRNY+   P  K     +S NG+V  A     G  V A AG+   A   
Sbjct: 508 GYDPFSRRWTRSRNYYAAKPGEKAAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAAL 567

Query: 82  PIAAAGAWKLVDTKSPVDQG 23
             AAAGA KLVDT +PVDQG
Sbjct: 568 E-AAAGAGKLVDTSAPVDQG 586


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = -3

Query: 241 GCDPFSRRWTKSRNYFIFNPVTKDSKNGHVVAASLESGGVNAA-------AGLADVAVFP 83
           G DPFSRRWT+SRNY+   P  K +   ++V  ++   G NA        AG+   A   
Sbjct: 508 GYDPFSRRWTRSRNYYAAKPGEKAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAAL 567

Query: 82  PIAAAGAWKLVDTKSPVDQG 23
             AAAGA KLVDT +PVDQG
Sbjct: 568 E-AAAGAGKLVDTSAPVDQG 586


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
           gi|223541691|gb|EEF43239.1| RNA polymerase-associated
           protein RTF1, putative [Ricinus communis]
          Length = 660

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 39/82 (47%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
 Frame = -3

Query: 241 GCDPFSRRWTKSRNYFIFNP-------VTKDSKNGHVVAASL--ESGGVNAAAGLADVAV 89
           G DPFSRRWT+SRNY++  P        T +  +G V  A+    + GV+A AG+A  A 
Sbjct: 510 GYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATAA 569

Query: 88  FPPIAAAGAWKLVDTKSPVDQG 23
               AAA A KLVDT +PVDQG
Sbjct: 570 ALE-AAADAGKLVDTAAPVDQG 590


>gb|AAZ32871.1| unknown [Medicago sativa]
          Length = 171

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/73 (42%), Positives = 41/73 (56%)
 Frame = -3

Query: 241 GCDPFSRRWTKSRNYFIFNPVTKDSKNGHVVAASLESGGVNAAAGLADVAVFPPIAAAGA 62
           G DPFSRRWT+SRNY+   P  + +   +    ++  GG N              AAAGA
Sbjct: 94  GYDPFSRRWTRSRNYYNSKPAEEAAAGNNTSGGAVGDGGCNGIGAGMTATAEALEAAAGA 153

Query: 61  WKLVDTKSPVDQG 23
            KLVDT++PVD+G
Sbjct: 154 GKLVDTRAPVDEG 166