BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024388
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    61   8e-08
ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containi...    61   8e-08
ref|XP_002511505.1| pentatricopeptide repeat-containing protein,...    60   1e-07
emb|CBI15289.3| unnamed protein product [Vitis vinifera]               57   1e-06
ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containi...    57   1e-06

>ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/71 (43%), Positives = 40/71 (56%)
 Frame = +2

Query: 89  SSDNVQKSQKCTKVRTKTTALTGQSTNSGQIVERICRILQQGKWGPAAEATLDNLNCSLG 268
           SS N +K     K  T    +T    N+  +VE +  ILQQ KWGPAAE  +  LNCS+ 
Sbjct: 286 SSKNFKKFPDNLKSPTGMAPITSSFLNAPNVVESVSCILQQLKWGPAAEEAIGKLNCSID 345

Query: 269 VYHGNQVLKRL 301
            Y  NQ+LKR+
Sbjct: 346 AYQANQILKRV 356


>ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 31/71 (43%), Positives = 40/71 (56%)
 Frame = +2

Query: 89  SSDNVQKSQKCTKVRTKTTALTGQSTNSGQIVERICRILQQGKWGPAAEATLDNLNCSLG 268
           SS N +K     K  T    +T    N+  +VE +  ILQQ KWGPAAE  +  LNCS+ 
Sbjct: 286 SSKNFKKFPDNLKSPTGMAPITSSFLNAPNVVESVSCILQQLKWGPAAEEAIGKLNCSID 345

Query: 269 VYHGNQVLKRL 301
            Y  NQ+LKR+
Sbjct: 346 AYQANQILKRV 356


>ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550620|gb|EEF52107.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 876

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 36/100 (36%), Positives = 54/100 (54%)
 Frame = +2

Query: 2   SYSHYFVPISSRQNSETKMNEGFTEVDVASSDNVQKSQKCTKVRTKTTALTGQSTNSGQI 181
           S +++   + + Q S+TK  E   E       + +K  + TK+       T +  ++G I
Sbjct: 265 STANFNANVQTVQTSDTKYGEYVAE-------DYRKPPRETKMPVVRVPSTRRFASNGHI 317

Query: 182 VERICRILQQGKWGPAAEATLDNLNCSLGVYHGNQVLKRL 301
           VE +  IL+Q +WGPAAE  L NLN S+  Y  NQVLK+L
Sbjct: 318 VENVAHILRQIRWGPAAEEALANLNYSMDPYQANQVLKQL 357


>emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = +2

Query: 158 QSTNSGQIVERICRILQQGKWGPAAEATLDNLNCSLGVYHGNQVLKRL 301
           Q  +SG +VE + RIL+Q  WGPAAE  L NLNC +  Y  NQVLK++
Sbjct: 318 QFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQI 365


>ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/48 (54%), Positives = 33/48 (68%)
 Frame = +2

Query: 158 QSTNSGQIVERICRILQQGKWGPAAEATLDNLNCSLGVYHGNQVLKRL 301
           Q  +SG +VE + RIL+Q  WGPAAE  L NLNC +  Y  NQVLK++
Sbjct: 309 QFGSSGHVVENVSRILRQLSWGPAAEEALRNLNCLMDAYQANQVLKQI 356