BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00024231
         (613 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   308   4e-82
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   305   3e-81
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   303   2e-80
ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation spec...   301   8e-80
ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation spec...   296   1e-78

>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
           predicted protein [Populus trichocarpa]
          Length = 639

 Score =  308 bits (790), Expect = 4e-82
 Identities = 143/179 (79%), Positives = 162/179 (90%)
 Frame = +3

Query: 75  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 254
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  +  F  S+ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDC 62

Query: 255 IIITHFHLDHIGALPYFTEICGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 434
           +IITHFHLDH+GALPYFTE+CGY+GPIYMTYPTKALAPLMLED+RKV+VDRRGEEEQF+S
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTS 122

Query: 435 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMT 611
            +I  C++KV AVDL+QTV+VDD+L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMT
Sbjct: 123 LHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  305 bits (782), Expect = 3e-81
 Identities = 141/179 (78%), Positives = 160/179 (89%)
 Frame = +3

Query: 75  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 254
           IECLVLGAGQEVGKSCV+VTI GKRIMFDCGMHMGY D RRYPDFS I  +  F  ++ C
Sbjct: 3   IECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHC 62

Query: 255 IIITHFHLDHIGALPYFTEICGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 434
           +IITHFHLDH+GALPYFTE+CGY+GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEEQF++
Sbjct: 63  VIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTA 122

Query: 435 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMT 611
            +I  CL KV AVDL+QTV+VD +L+IR YYAGHV+GAAMFYAKV DSA+VYTGDYNMT
Sbjct: 123 DHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Cucumis sativus]
          Length = 649

 Score =  303 bits (775), Expect = 2e-80
 Identities = 137/179 (76%), Positives = 162/179 (90%)
 Frame = +3

Query: 75  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 254
           I+CLVLGAGQEVGKSCV+VTI GKRIMFDCGMH+GY+D RRYPDFSRI  +  +   ++C
Sbjct: 3   IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSC 62

Query: 255 IIITHFHLDHIGALPYFTEICGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 434
           IIITHFHLDHIGALPYFTE+CGY+GPIYMTYPT ALAP+ LEDYRKVMVDRRGE EQF++
Sbjct: 63  IIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTN 122

Query: 435 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMT 611
            +I++CLKKV  VDL+QT++VD++L+IR YYAGHV+GAAMFYAKV D+A+VYTGDYNMT
Sbjct: 123 DHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMT 181


>ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Brachypodium distachyon]
          Length = 553

 Score =  301 bits (770), Expect = 8e-80
 Identities = 142/183 (77%), Positives = 162/183 (88%), Gaps = 4/183 (2%)
 Frame = +3

Query: 75  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRI----PNATHFTK 242
           IECLVLGAGQEVGKSCV+VTIGGKRIMFDCGMHMGY D  RYPDF+RI    P  T FT 
Sbjct: 3   IECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTS 62

Query: 243 SITCIIITHFHLDHIGALPYFTEICGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEE 422
           +I+C+IITHFHLDHIGALPYFTE+CGY GPIYMTYPTKALAPLMLEDYRKVMVD+RGEEE
Sbjct: 63  AISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEE 122

Query: 423 QFSSQNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDY 602
           Q+S ++I+ C+KKV  VDL+QT++V+ +L IR YYAGHV+GAAM YAKV D+A+VYTGDY
Sbjct: 123 QYSYEDILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDY 182

Query: 603 NMT 611
           NMT
Sbjct: 183 NMT 185


>ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Glycine max]
          Length = 516

 Score =  296 bits (759), Expect = 1e-78
 Identities = 139/179 (77%), Positives = 157/179 (87%)
 Frame = +3

Query: 75  IECLVLGAGQEVGKSCVIVTIGGKRIMFDCGMHMGYLDERRYPDFSRIPNATHFTKSITC 254
           IE LVLGAGQEVGKSCV+VTI  KRIMFDCGMHMGYLD RRYPDF+RI  +     +++C
Sbjct: 3   IETLVLGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSC 62

Query: 255 IIITHFHLDHIGALPYFTEICGYDGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQFSS 434
           IIITHFHLDH+GAL YFTE+ GY+GP+YMTYPTKALAPLMLEDYRKVMVDRRGEEE FSS
Sbjct: 63  IIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSS 122

Query: 435 QNIVDCLKKVTAVDLRQTVKVDDELEIRGYYAGHVIGAAMFYAKVKDSALVYTGDYNMT 611
             I +C+KKV AVDLRQTV+V+ +L+IR YYAGHVIGAAMFYAKV D+ +VYTGDYNMT
Sbjct: 123 DQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMT 181