BLASTX nr result

ID: Coptis21_contig00023966 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023966
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI25555.3| unnamed protein product [Vitis vinifera]              106   2e-21
ref|XP_002263317.1| PREDICTED: protein SRG1 [Vitis vinifera]          106   2e-21
ref|XP_002263289.1| PREDICTED: protein SRG1-like [Vitis vinifera]     105   4e-21
ref|XP_002324604.1| predicted protein [Populus trichocarpa] gi|2...   105   4e-21
emb|CBI25556.3| unnamed protein product [Vitis vinifera]              104   7e-21

>emb|CBI25555.3| unnamed protein product [Vitis vinifera]
          Length = 381

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
 Frame = +3

Query: 114 LTLFDLSSPSSSTEEKENELEQLMK-------FQVVGHDIPNNLIDEL*RISTEFFDLPM 272
           + + DL   +SS+   E ELE+L         FQ + H + ++ +D++  ++ EFF LPM
Sbjct: 50  IPIIDLGLLTSSSPTGEPELEKLRSALSSWGCFQAINHGMASSFLDKVRAVTKEFFALPM 109

Query: 273 EEKHKYSINYDGKHEYLQGYGNELVVSEEQVIEWIDRLYLMVKPVDQRKYKYWPENPNGF 452
           EEK KYS       E ++GYGN+ VV+E Q ++W DRLYL+V+P DQRK K WPENP+ F
Sbjct: 110 EEKQKYSRTL----EDIEGYGNDTVVTEHQTLDWTDRLYLLVRPEDQRKLKLWPENPDTF 165

Query: 453 R 455
           R
Sbjct: 166 R 166


>ref|XP_002263317.1| PREDICTED: protein SRG1 [Vitis vinifera]
          Length = 377

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
 Frame = +3

Query: 114 LTLFDLSSPSSSTEEKENELEQLMK-------FQVVGHDIPNNLIDEL*RISTEFFDLPM 272
           + + DL   +SS+   E ELE+L         FQ + H + ++ +D++  ++ EFF LPM
Sbjct: 50  IPIIDLGLLTSSSPTGEPELEKLRSALSSWGCFQAINHGMASSFLDKVRAVTKEFFALPM 109

Query: 273 EEKHKYSINYDGKHEYLQGYGNELVVSEEQVIEWIDRLYLMVKPVDQRKYKYWPENPNGF 452
           EEK KYS       E ++GYGN+ VV+E Q ++W DRLYL+V+P DQRK K WPENP+ F
Sbjct: 110 EEKQKYSRTL----EDIEGYGNDTVVTEHQTLDWTDRLYLLVRPEDQRKLKLWPENPDTF 165

Query: 453 R 455
           R
Sbjct: 166 R 166


>ref|XP_002263289.1| PREDICTED: protein SRG1-like [Vitis vinifera]
          Length = 361

 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
 Frame = +3

Query: 78  PQQLYFSLSPHSLTLFDLSSPSSSTEEKENELEQLMK----------FQVVGHDIPNNLI 227
           P   +    P  +    L S SSS   +  E E+L K          FQ VGH I ++ +
Sbjct: 40  PMDSFLPSDPIPIIDISLLSSSSSLSSRGGEEEELQKLKSALTSWGCFQAVGHGISSSFL 99

Query: 228 DEL*RISTEFFDLPMEEKHKYSINYDGKHEYLQGYGNELVVSEEQVIEWIDRLYLMVKPV 407
           D++  +  +FF LP+EEK KYS   DG    ++GYGNE ++SE QV++W  RL L ++PV
Sbjct: 100 DKVREVGKQFFALPVEEKQKYSRATDG----IEGYGNEPILSENQVLDWSYRLLLRLQPV 155

Query: 408 DQRKYKYWPENPNGFR 455
           DQRK + WPENPN FR
Sbjct: 156 DQRKLQLWPENPNEFR 171


>ref|XP_002324604.1| predicted protein [Populus trichocarpa] gi|222866038|gb|EEF03169.1|
           predicted protein [Populus trichocarpa]
          Length = 272

 Score =  105 bits (262), Expect = 4e-21
 Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
 Frame = +3

Query: 129 LSSPSSSTEEKEN---ELEQLMKFQVVGHDIPNNLIDEL*RISTEFFDLPMEEKHKYSIN 299
           L+SP +S +E E     L     FQV+ H + ++ +D++  +S +FF  PMEEK KYS  
Sbjct: 53  LTSPLTSAQELEKLKLALSSWGCFQVINHGMTSSFLDKIREVSKQFFGFPMEEKQKYSRE 112

Query: 300 YDGKHEYLQGYGNELVVSEEQVIEWIDRLYLMVKPVDQRKYKYWPENPNGFR 455
            D     ++GYGN++++S+ Q ++W DRLYL + P DQRK K+WPENP  FR
Sbjct: 113 ADS----IEGYGNDMILSDHQTVDWTDRLYLTISPEDQRKIKFWPENPKDFR 160


>emb|CBI25556.3| unnamed protein product [Vitis vinifera]
          Length = 282

 Score =  104 bits (260), Expect = 7e-21
 Identities = 55/121 (45%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
 Frame = +3

Query: 114 LTLFDLSSPSSSTEEKENELEQLMK-------FQVVGHDIPNNLIDEL*RISTEFFDLPM 272
           ++L   SS  SS   +E EL++L         FQ VGH I ++ +D++  +  +FF LP+
Sbjct: 15  ISLLSSSSSLSSRGGEEEELQKLKSALTSWGCFQAVGHGISSSFLDKVREVGKQFFALPV 74

Query: 273 EEKHKYSINYDGKHEYLQGYGNELVVSEEQVIEWIDRLYLMVKPVDQRKYKYWPENPNGF 452
           EEK KYS   DG    ++GYGNE ++SE QV++W  RL L ++PVDQRK + WPENPN F
Sbjct: 75  EEKQKYSRATDG----IEGYGNEPILSENQVLDWSYRLLLRLQPVDQRKLQLWPENPNEF 130

Query: 453 R 455
           R
Sbjct: 131 R 131


Top