BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023788
         (647 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...   115   7e-24
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]   115   7e-24
emb|CBI37137.3| unnamed protein product [Vitis vinifera]              113   3e-23
ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...   113   3e-23
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...   111   1e-22

>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score =  115 bits (288), Expect = 7e-24
 Identities = 60/93 (64%), Positives = 69/93 (74%), Gaps = 6/93 (6%)
 Frame = -3

Query: 645  SSNRNQPSTTNKPSRSSYST------QPEILIRHICTFIQQNGGSTTSSSVVAHFKERIP 484
            SS+ N+  +T+    SS ST      QPE+LIR ICTFIQQ GGST S+S+V HFK+RIP
Sbjct: 1134 SSSANRARSTDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIP 1193

Query: 483  SKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 385
            SKDL LFKNLL EIATLEK P G  WVLKPEY+
Sbjct: 1194 SKDLPLFKNLLKEIATLEKDPNGSSWVLKPEYR 1226


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  115 bits (288), Expect = 7e-24
 Identities = 60/93 (64%), Positives = 69/93 (74%), Gaps = 6/93 (6%)
 Frame = -3

Query: 645  SSNRNQPSTTNKPSRSSYST------QPEILIRHICTFIQQNGGSTTSSSVVAHFKERIP 484
            SS+ N+  +T+    SS ST      QPE+LIR ICTFIQQ GGST S+S+V HFK+RIP
Sbjct: 1156 SSSANRARSTDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIP 1215

Query: 483  SKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 385
            SKDL LFKNLL EIATLEK P G  WVLKPEY+
Sbjct: 1216 SKDLPLFKNLLKEIATLEKDPNGSSWVLKPEYR 1248


>emb|CBI37137.3| unnamed protein product [Vitis vinifera]
          Length = 1116

 Score =  113 bits (282), Expect = 3e-23
 Identities = 58/90 (64%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
 Frame = -3

Query: 645  SSNRNQPSTTNKPSRSSY---STQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKD 475
            SS      +    SRS++   S QPE+LIR ICTFIQQ GGST S+S+V HFK+RIPSKD
Sbjct: 1026 SSQARSTDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNSTSIVQHFKDRIPSKD 1085

Query: 474  LALFKNLLMEIATLEKRPTGKLWVLKPEYQ 385
            L LFKNLL EIATLEK P G  WVLKPEY+
Sbjct: 1086 LPLFKNLLKEIATLEKDPNGSSWVLKPEYR 1115


>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score =  113 bits (282), Expect = 3e-23
 Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
 Frame = -3

Query: 645  SSNR--NQPSTTNKPSRSSYSTQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDL 472
            S+NR  ++ +  ++PS++    QPEILIR ICTFIQQ GG T S+++V HFK+RI  KD+
Sbjct: 1140 SANRAGSENNGVSRPSKNLSGVQPEILIRKICTFIQQRGGITDSATIVNHFKDRILEKDM 1199

Query: 471  ALFKNLLMEIATLEKRPTGKLWVLKPEYQQQ 379
             LFKNLL EIATLEK P GK+WVLKPEY+QQ
Sbjct: 1200 PLFKNLLKEIATLEKDPNGKVWVLKPEYRQQ 1230


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score =  111 bits (277), Expect = 1e-22
 Identities = 55/87 (63%), Positives = 67/87 (77%)
 Frame = -3

Query: 645  SSNRNQPSTTNKPSRSSYSTQPEILIRHICTFIQQNGGSTTSSSVVAHFKERIPSKDLAL 466
            +S  ++ S  +KP ++  S QPEILIR ICTFIQ+ GGS+ SSS+V HFK+RIPSKDL L
Sbjct: 1120 TSAMSENSGASKPPQTLSSVQPEILIRQICTFIQRRGGSSDSSSIVQHFKDRIPSKDLPL 1179

Query: 465  FKNLLMEIATLEKRPTGKLWVLKPEYQ 385
            FKNLL EIA+L +   GK WVLKPEYQ
Sbjct: 1180 FKNLLKEIASLREDANGKQWVLKPEYQ 1206