BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023579
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511392.1| pentatricopeptide repeat-containing protein,...   116   2e-24
ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat...   112   2e-23
gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein...   111   5e-23
ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat...   107   8e-22
emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]   107   8e-22

>ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550507|gb|EEF51994.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 441

 Score =  116 bits (291), Expect = 2e-24
 Identities = 57/100 (57%), Positives = 71/100 (71%)
 Frame = +2

Query: 2   EFGVKPSCXXXXXXXXXXXXXXALNSVKEIHGFSIRNGIDLHLRLSSGLIEVYGRCGCLR 181
           + G+KP+               ALN ++EIHG+SIRN ID H +L SGL++ YGRCGCL 
Sbjct: 190 QLGLKPNLITLLALLPACVGIAALNLIREIHGYSIRNDIDRHPQLGSGLLDAYGRCGCLI 249

Query: 182 NARCVFERMDERDVVAWSSMVSAYALHGEAESALSIFREM 301
           NA  VF  M ERDVVAWSS++SAYALHGEA++AL IFR+M
Sbjct: 250 NASNVFCGMKERDVVAWSSLISAYALHGEAKNALEIFRQM 289



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 22/71 (30%), Positives = 43/71 (60%)
 Frame = +2

Query: 89  IHGFSIRNGIDLHLRLSSGLIEVYGRCGCLRNARCVFERMDERDVVAWSSMVSAYALHGE 268
           +H   ++ G   +  ++S L+++YG+C C+ +AR +F+ + +R+VV W++M+S Y     
Sbjct: 85  VHAHIVKMGFLSNPFVASALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNR 144

Query: 269 AESALSIFREM 301
              AL +F  M
Sbjct: 145 VRDALDMFDAM 155


>ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510-like [Cucumis sativus]
          Length = 391

 Score =  112 bits (281), Expect = 2e-23
 Identities = 53/98 (54%), Positives = 71/98 (72%)
 Frame = +2

Query: 8   GVKPSCXXXXXXXXXXXXXXALNSVKEIHGFSIRNGIDLHLRLSSGLIEVYGRCGCLRNA 187
           G+KP+               +L+ +K+IHGF++RN I  HL+LSSGL+E YGRCGCL  A
Sbjct: 139 GLKPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGAHLQLSSGLVEAYGRCGCLSYA 198

Query: 188 RCVFERMDERDVVAWSSMVSAYALHGEAESALSIFREM 301
             VF+ M ERDVVAWSS++SA+ALHGEA +AL+IF++M
Sbjct: 199 HNVFDNMTERDVVAWSSLISAHALHGEASTALNIFQQM 236


>gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein [Cucumis melo
           subsp. melo]
          Length = 391

 Score =  111 bits (278), Expect = 5e-23
 Identities = 53/98 (54%), Positives = 71/98 (72%)
 Frame = +2

Query: 8   GVKPSCXXXXXXXXXXXXXXALNSVKEIHGFSIRNGIDLHLRLSSGLIEVYGRCGCLRNA 187
           G+KP+               +L+ +K+IHGF++RN I  HL+LSSGL+E YGRCGCL  A
Sbjct: 139 GLKPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGGHLQLSSGLVEAYGRCGCLSYA 198

Query: 188 RCVFERMDERDVVAWSSMVSAYALHGEAESALSIFREM 301
             VF+ M ERDVVAWSS++SA+ALHGEA +AL+IF++M
Sbjct: 199 HNVFDNMTERDVVAWSSLISAHALHGEASTALNIFQQM 236


>ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera] gi|298205226|emb|CBI17285.3|
           unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
 Frame = +2

Query: 2   EFGVKPSCXXXXXXXXXXXXXXALNSVKEIHGFSIRNGIDLHLRLSSGLIEVYGRCGCLR 181
           E G+K +               AL  +KEIHG++IRNGID H  L S L+E YGRCGC+ 
Sbjct: 174 EVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIV 233

Query: 182 NARCVFE--RMDERDVVAWSSMVSAYALHGEAESALSIFREM 301
           N++CVF+   M ERDVVAWSS++SAYALHG+A +AL  F +M
Sbjct: 234 NSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQM 275


>emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  107 bits (268), Expect = 8e-22
 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
 Frame = +2

Query: 2   EFGVKPSCXXXXXXXXXXXXXXALNSVKEIHGFSIRNGIDLHLRLSSGLIEVYGRCGCLR 181
           E G+K +               AL  +KEIHG++IRNGID H  L S L+E YGRCGC+ 
Sbjct: 174 EVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLVEAYGRCGCIV 233

Query: 182 NARCVFE--RMDERDVVAWSSMVSAYALHGEAESALSIFREM 301
           N++CVF+   M ERDVVAWSS++SAYALHG+A +AL  F +M
Sbjct: 234 NSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQM 275