BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023102
         (734 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]   220   3e-55
ref|XP_002267809.2| PREDICTED: pentatricopeptide repeat-containi...   218   8e-55
ref|XP_003626687.1| Pentatricopeptide repeat-containing protein ...   199   4e-49
ref|XP_002521681.1| pentatricopeptide repeat-containing protein,...   193   4e-47
ref|XP_003595941.1| Pentatricopeptide repeat-containing protein ...   179   5e-43

>emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score =  220 bits (560), Expect = 3e-55
 Identities = 110/207 (53%), Positives = 150/207 (72%), Gaps = 3/207 (1%)
 Frame = +1

Query: 121 KRRPHNSKKPTRNKTLTPSPQPKPIFHSPSLSTAKKTFDQIISTSQIPLDLRHYNSLLKS 300
           K+RP  S K  + +T    P+   IF+SP+L  AKK F  I +TS  PLDLR +N+LL+S
Sbjct: 44  KKRPQPSGKTKKTRTPIEDPKSPVIFNSPNLLDAKKLFASITTTSTTPLDLRFHNALLQS 103

Query: 301 FSQISNIHDSFSFLQYMT---PNFTPDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKTLD 471
           +S IS ++DS SFL++M    P+F+P+ STY+ILL+QSCK P      +SDLS + +TL+
Sbjct: 104 YSSISTVNDSISFLRHMIKSQPSFSPERSTYHILLSQSCKSP------NSDLSAVHQTLN 157

Query: 472 LMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTR 651
           LMV +  PPD V  D+AVR+LCS  REE AIE++KE+ +K+S PD FT+NF++RHLCKTR
Sbjct: 158 LMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTR 217

Query: 652 SLNYVYEFIDEMKEELSLQPDLVTYTI 732
           +L+ VY FIDE++    L+PDLVTYTI
Sbjct: 218 ALSTVYNFIDELQNSFQLKPDLVTYTI 244



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
 Frame = +1

Query: 244 ISTSQIPLDLRHYNSLLKSFSQISNIHDSFSFLQYMTPNFT--PDHSTYNILLTQSCKIP 417
           +S    P D   YN +++   +   +   ++F+  +  +F   PD  TY IL+   C   
Sbjct: 194 LSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVC--- 250

Query: 418 PNDSQDHSDLSVIRKTLDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYS 597
                +  +L    + L+++ E    PD    +  ++  C + +  +AI + K+M  +  
Sbjct: 251 -----NGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYKKMKEEGV 305

Query: 598 EPDMFTFNFMVRHLCKTRSLNYVYEFIDEMKEELSLQPDLVTYT 729
           EPD+ T+N ++  L K+  +    +F+D M  E+   PD VTYT
Sbjct: 306 EPDLVTYNTLIFGLSKSGRVKEARKFLDIM-AEMGHFPDAVTYT 348


>ref|XP_002267809.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like [Vitis vinifera]
          Length = 458

 Score =  218 bits (556), Expect = 8e-55
 Identities = 109/207 (52%), Positives = 149/207 (71%), Gaps = 3/207 (1%)
 Frame = +1

Query: 121 KRRPHNSKKPTRNKTLTPSPQPKPIFHSPSLSTAKKTFDQIISTSQIPLDLRHYNSLLKS 300
           K+RP  S K  + +T    P+   IF+SP+L  AKK F  I +TS  PLD R +N+LL+S
Sbjct: 112 KKRPQPSGKTKKTRTPIEDPKSPVIFNSPNLLDAKKLFASITTTSTTPLDFRFHNALLQS 171

Query: 301 FSQISNIHDSFSFLQYMT---PNFTPDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKTLD 471
           +S IS ++DS SFL++M    P+F+P+ STY+ILL+QSCK P      +SDLS + +TL+
Sbjct: 172 YSSISTVNDSISFLRHMIKSQPSFSPERSTYHILLSQSCKSP------NSDLSAVHQTLN 225

Query: 472 LMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTR 651
           LMV +  PPD V  D+AVR+LCS  REE AIE++KE+ +K+S PD FT+NF++RHLCKTR
Sbjct: 226 LMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTR 285

Query: 652 SLNYVYEFIDEMKEELSLQPDLVTYTI 732
           +L+ VY FIDE++    L+PDLVTYTI
Sbjct: 286 ALSTVYNFIDELQNSFQLKPDLVTYTI 312


>ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520709|gb|AET01163.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  199 bits (507), Expect = 4e-49
 Identities = 97/209 (46%), Positives = 152/209 (72%), Gaps = 3/209 (1%)
 Frame = +1

Query: 115 NNKRRPHNSKKPTRNKTLTPSPQPKPIFHSPSLSTAKKTFDQIISTSQIPLDLRHYNSLL 294
           N  R+PH  +K  ++++ + SP+P  +F SP+L  AK  F+  +++S  P+D R +NSLL
Sbjct: 36  NKTRKPH--QKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLL 93

Query: 295 KSFSQISNIHDSFSFLQYMT---PNFTPDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKT 465
           +S++ IS I+DS +FL++MT   P+F+PD STY+ILLT  CK   +    +S LS+I +T
Sbjct: 94  QSYASISTINDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQT 150

Query: 466 LDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCK 645
           L+LMV + + PD   VDLAVR+LC+  R +DA+E+IKE+  K+  PD++++NF+V++LCK
Sbjct: 151 LNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCK 210

Query: 646 TRSLNYVYEFIDEMKEELSLQPDLVTYTI 732
           +R+L+ VY FIDEM+ +  ++P+LVTYTI
Sbjct: 211 SRTLSLVYAFIDEMRTKFDVKPNLVTYTI 239



 Score = 62.8 bits (151), Expect = 7e-08
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
 Frame = +1

Query: 208 SLSTAKKTFDQI-----ISTSQIPLDLRHYNSLLKSFSQISNIHDSFSFLQYMTPNFT-- 366
           SL TA +  D +     +S+     D+  YN L+K+  +   +   ++F+  M   F   
Sbjct: 172 SLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVK 231

Query: 367 PDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKTLDLMVENQVPPDHVAVDLAVRTLCSVS 546
           P+  TY IL+   C           +L    + +D++ E    PD    +  ++  C +S
Sbjct: 232 PNLVTYTILIDNVCNT--------KNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLS 283

Query: 547 REEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLNYVYEFIDEMKEELSLQPDLVTY 726
           R  +AIE+   M  K  EPD+ T+N ++  L K+  ++   + +  M E+    PD VTY
Sbjct: 284 RGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHF-PDEVTY 342

Query: 727 T 729
           T
Sbjct: 343 T 343


>ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539072|gb|EEF40668.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 458

 Score =  193 bits (490), Expect = 4e-47
 Identities = 100/208 (48%), Positives = 142/208 (68%), Gaps = 6/208 (2%)
 Frame = +1

Query: 127 RPHNSKKPTRNKTLTPSPQP---KPIFHSPSLSTAKKTFDQIISTSQIPLDLRHYNSLLK 297
           +PH   K T+ +     P P   K +F SP L+ AK+ F+ +IST+++PLDLR ++S L+
Sbjct: 29  KPHYLSKKTKLQLSQKIPTPIQQKRLFKSPELNEAKEIFNSLISTTRVPLDLRFHHSFLQ 88

Query: 298 SFSQISNIHDSFSFLQYMT---PNFTPDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKTL 468
           S+S IS I DS S L++M    P+FTP  STY+ILL+QSCK P         LS + + L
Sbjct: 89  SYSSISTIDDSISLLRHMIKTLPSFTPTISTYHILLSQSCKAPD------PTLSPVHQIL 142

Query: 469 DLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKT 648
           +LMV N   P  V VD+AVR LCS  +E+DA++++KE+ +K+S+PD FT+NF+V+ LCK 
Sbjct: 143 NLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKCLCKC 202

Query: 649 RSLNYVYEFIDEMKEELSLQPDLVTYTI 732
           R+L+ VY FIDEM+    L+P+LVTYTI
Sbjct: 203 RALSNVYSFIDEMRSSFDLEPNLVTYTI 230



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
 Frame = +1

Query: 208 SLSTAKKTFDQIISTSQIPL-----DLRHYNSLLKSFSQISNIHDSFSFLQYMTPNFT-- 366
           +L +A K  D +    ++ L     D   YN L+K   +   + + +SF+  M  +F   
Sbjct: 163 ALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKCLCKCRALSNVYSFIDEMRSSFDLE 222

Query: 367 PDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKTLDLMVENQVPPDHVAVDLAVRTLCSVS 546
           P+  TY IL+   C        +  +L    + L ++ E    PD    +  ++  C +S
Sbjct: 223 PNLVTYTILIDNVC--------NSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLS 274

Query: 547 REEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLNYVYEFIDEMKEELSLQPDLVTY 726
           +  DAI++ K+M  +  EPD+ T+N ++  L K   ++    ++  M E     PD VTY
Sbjct: 275 KGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHF-PDAVTY 333

Query: 727 T 729
           T
Sbjct: 334 T 334


>ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484989|gb|AES66192.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  179 bits (454), Expect = 5e-43
 Identities = 92/209 (44%), Positives = 143/209 (68%), Gaps = 3/209 (1%)
 Frame = +1

Query: 115 NNKRRPHNSKKPTRNKTLTPSPQPKPIFHSPSLSTAKKTFDQIISTSQIPLDLRHYNSLL 294
           N  R+PH  +K  ++++ + SP+P  +F SP+L  AK  F+  +++S  P+D R +NSLL
Sbjct: 52  NKTRKPH--QKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLL 109

Query: 295 KSFSQISNIHDSFSFLQYMT---PNFTPDHSTYNILLTQSCKIPPNDSQDHSDLSVIRKT 465
           +S++ IS I+DS +FL++MT   P+F+PD STY+ILLT  CK   +    +S LS+I +T
Sbjct: 110 QSYASISTINDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQT 166

Query: 466 LDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIEMIKEMGVKYSEPDMFTFNFMVRHLCK 645
           L+LMV + + PD   VDLAVR+LC+  R +DA+E+IKE+  K+  PD++++NF+V++LCK
Sbjct: 167 LNLMVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCK 226

Query: 646 TRSLNYVYEFIDEMKEELSLQPDLVTYTI 732
           +R+L+ VY             P+LVTYTI
Sbjct: 227 SRTLSLVY-------------PNLVTYTI 242