BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023090
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]   117   1e-24
ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal doma...   113   2e-23
emb|CBI35690.3| unnamed protein product [Vitis vinifera]              113   2e-23
ref|XP_002519032.1| double-stranded RNA binding protein, putativ...    99   4e-19
ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18

>emb|CAN72816.1| hypothetical protein VITISV_004100 [Vitis vinifera]
          Length = 894

 Score =  117 bits (293), Expect = 1e-24
 Identities = 73/157 (46%), Positives = 85/157 (54%)
 Frame = +3

Query: 3   LLILQHGQXXXXXXXXXXXXXVGSPVQASQPPVQSHGTRPPLEEEMGTRQLSREAPKKFP 182
           LLILQHGQ             V  P+Q S P VQS G+  P +EEM  RQL+R  PK+FP
Sbjct: 523 LLILQHGQDTREHASSDPPFPVRPPIQVSVPRVQSRGSWFPADEEMSPRQLNRAVPKEFP 582

Query: 183 REIPLGSETMHSDKHRHSRATSFHGVEGSASLNRARFEKRKFSKEARQRDDRLRLKQSLS 362
               L S+TMH +KHR    + FH VE SAS +R   E ++ SKE   RDDRLRL  SL 
Sbjct: 583 ----LDSDTMHIEKHRPHHPSFFHKVESSASSDRILHENQRLSKEVLHRDDRLRLNHSLP 638

Query: 363 NYHPIRGEGFPWGPLVKRRKDSHTEHGEDSLLYAETP 473
            YH   GE  P G     R D   E G  +  YAETP
Sbjct: 639 GYHSFSGEEVPLGRSSSNR-DLDFESGRGA-PYAETP 673


>ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1
           [Vitis vinifera]
          Length = 860

 Score =  113 bits (282), Expect = 2e-23
 Identities = 64/133 (48%), Positives = 75/133 (56%)
 Frame = +3

Query: 3   LLILQHGQXXXXXXXXXXXXXVGSPVQASQPPVQSHGTRPPLEEEMGTRQLSREAPKKFP 182
           LLILQHGQ             V  P+Q S P VQS G+  P +EEM  RQL+R  PK+FP
Sbjct: 542 LLILQHGQDTREHASSDPPFPVRPPIQVSVPRVQSRGSWFPADEEMSPRQLNRAVPKEFP 601

Query: 183 REIPLGSETMHSDKHRHSRATSFHGVEGSASLNRARFEKRKFSKEARQRDDRLRLKQSLS 362
               L S+TMH +KHR    + FH VE SAS +R   E ++ SKE   RDDRLRL  SL 
Sbjct: 602 ----LDSDTMHIEKHRPHHPSFFHKVESSASSDRILHENQRLSKEVLHRDDRLRLNHSLP 657

Query: 363 NYHPIRGEGFPWG 401
            YH   GE  P G
Sbjct: 658 GYHSFSGEEVPLG 670


>emb|CBI35690.3| unnamed protein product [Vitis vinifera]
          Length = 788

 Score =  113 bits (282), Expect = 2e-23
 Identities = 64/133 (48%), Positives = 75/133 (56%)
 Frame = +3

Query: 3   LLILQHGQXXXXXXXXXXXXXVGSPVQASQPPVQSHGTRPPLEEEMGTRQLSREAPKKFP 182
           LLILQHGQ             V  P+Q S P VQS G+  P +EEM  RQL+R  PK+FP
Sbjct: 542 LLILQHGQDTREHASSDPPFPVRPPIQVSVPRVQSRGSWFPADEEMSPRQLNRAVPKEFP 601

Query: 183 REIPLGSETMHSDKHRHSRATSFHGVEGSASLNRARFEKRKFSKEARQRDDRLRLKQSLS 362
               L S+TMH +KHR    + FH VE SAS +R   E ++ SKE   RDDRLRL  SL 
Sbjct: 602 ----LDSDTMHIEKHRPHHPSFFHKVESSASSDRILHENQRLSKEVLHRDDRLRLNHSLP 657

Query: 363 NYHPIRGEGFPWG 401
            YH   GE  P G
Sbjct: 658 GYHSFSGEEVPLG 670


>ref|XP_002519032.1| double-stranded RNA binding protein, putative [Ricinus communis]
            gi|223541695|gb|EEF43243.1| double-stranded RNA binding
            protein, putative [Ricinus communis]
          Length = 978

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 66/167 (39%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3    LLILQHGQXXXXXXXXXXXXXV--GSPVQASQPPVQSHGTRPPLEEEMGTRQLSREAPKK 176
            LLILQHGQ             V   + +Q S P VQS G   P+EEEM  RQL+R     
Sbjct: 571  LLILQHGQDLRDPAPSESPFPVRPSNSMQVSVPRVQSRGNWVPVEEEMSPRQLNRAVT-- 628

Query: 177  FPREIPLGSETMHSDKHRHSRATSFHGVEGSASLNRARFEKRKFSKEARQRDDRLRLKQS 356
              RE P+ +E MH DKHR    + F  VE S    R   E ++  K A  +DDRLRL Q+
Sbjct: 629  --REFPMDTEPMHIDKHRPHHPSFFPKVESSIPSERMPHENQRLPKVAPYKDDRLRLNQT 686

Query: 357  LSNYHPIRGEGFPWGPLVKRRKDSHTEHGEDSLLYAETPVRVLQDIA 497
            +SNY  + GE           +D   E  + ++  AETPVRVL +I+
Sbjct: 687  MSNYQSLSGEENSLSRSSSSNRDLDVE-SDRAVSSAETPVRVLHEIS 732


>ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1|
            predicted protein [Populus trichocarpa]
          Length = 967

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 65/166 (39%), Positives = 84/166 (50%), Gaps = 1/166 (0%)
 Frame = +3

Query: 3    LLILQHGQXXXXXXXXXXXXXVGSPVQASQPPVQSHGTRPPLEEEMGTRQLSREAPKKFP 182
            LLILQHG                   Q S P VQS G+  P+EEEM  RQL+R      P
Sbjct: 573  LLILQHGHDSRDNAPSESPFPARPSTQVSAPRVQSVGSWVPVEEEMSPRQLNRT-----P 627

Query: 183  REIPLGSETMHSDKHRHSRATSFHGVEGSASLNRARFEKRKFSKEARQRDDRLRLKQSLS 362
            RE PL S+ M+ +KHR    + FH VE +   +R   E ++  KEA  RDDR++L  S S
Sbjct: 628  REFPLDSDPMNIEKHRTHHPSFFHKVESNIPSDRMIHENQRQPKEATYRDDRMKLNHSTS 687

Query: 363  NYHPIRGEGFPWGPLVKRRKDSHTE-HGEDSLLYAETPVRVLQDIA 497
            NY   +GE     PL +   +   +   E +    ETPV VLQ+IA
Sbjct: 688  NYPSFQGE----CPLSRSSSNRDLDLESERAFSSTETPVEVLQEIA 729