BLASTX nr result
ID: Coptis21_contig00023046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00023046
(608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002527150.1| pentatricopeptide repeat-containing protein,... 213 2e-53
ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containi... 213 2e-53
ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. l... 188 7e-46
ref|NP_179305.2| pentatricopeptide repeat-containing protein [Ar... 185 5e-45
ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containi... 183 2e-44
>ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223533489|gb|EEF35232.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 874
Score = 213 bits (542), Expect = 2e-53
Identities = 109/180 (60%), Positives = 128/180 (71%), Gaps = 1/180 (0%)
Frame = -1
Query: 602 KEALYIIMLNELLAGGKTLEANQVFIAAMDRGFDVRGFSYKDLIEGLCNEEKLKQARSTL 423
KEALY +M NELL GGK EA ++F A+DR FD+ F YKDLI+ LC +EKL+ A L
Sbjct: 697 KEALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVL 756
Query: 422 HEMIDKEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPN-KN 246
H +IDK YQFDPASFMP+ID GK GNKH ADELAE MM MAS+ + + PN K
Sbjct: 757 HRLIDKGYQFDPASFMPVIDGFGKMGNKHVADELAERMMEMASESNKENKAY---PNVKG 813
Query: 245 TLNRGKPQTDGNDWQTILNRDDGSGIAVKALTRVQKGWGQGIISSLQSQKREIPDYWEDS 66
+ R K + GNDW I++RDDGSGIA+KAL RVQKGWGQG ISSLQ QK E DYW+ S
Sbjct: 814 HILRNKNKDAGNDWPIIVHRDDGSGIALKALKRVQKGWGQGSISSLQPQKLEFFDYWDGS 873
>ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera] gi|297744485|emb|CBI37747.3| unnamed
protein product [Vitis vinifera]
Length = 878
Score = 213 bits (542), Expect = 2e-53
Identities = 107/177 (60%), Positives = 127/177 (71%)
Frame = -1
Query: 602 KEALYIIMLNELLAGGKTLEANQVFIAAMDRGFDVRGFSYKDLIEGLCNEEKLKQARSTL 423
KEALY +M NELL GG+ EA ++F AA+DR FD+ F Y DLIE LC +E L+ A L
Sbjct: 701 KEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDIL 760
Query: 422 HEMIDKEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNT 243
H+MIDK Y+FDPASFMP+ID LGK G KH+ADELAE MM MAS+G + E N
Sbjct: 761 HKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDMASEGMVENKITRNESAFNR 820
Query: 242 LNRGKPQTDGNDWQTILNRDDGSGIAVKALTRVQKGWGQGIISSLQSQKREIPDYWE 72
R K G+DWQTI++RDDGSG+A+KAL RVQKGWGQG ISSLQ QK + DYWE
Sbjct: 821 QKRNK--FSGSDWQTIIHRDDGSGLALKALKRVQKGWGQGSISSLQPQKNDFLDYWE 875
>ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 874
Score = 188 bits (477), Expect = 7e-46
Identities = 95/179 (53%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
Frame = -1
Query: 602 KEALYIIMLNELLAGGKTLEANQVFIAAMDRGFDVRGFSYKDLIEGLCNEEKLKQARSTL 423
KE LY +M NELLA G+ L+A ++ A +DRGF++ F YKDL+ LC +++L+ A L
Sbjct: 697 KEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASGIL 756
Query: 422 HEMIDKEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNT 243
H+MIDK Y FDPA+ MP+ID LGK GNK EA+ AE MM MAS G + +PN
Sbjct: 757 HKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMMEMASVGEVANKV---DPNATD 813
Query: 242 LNRGK-PQTDGNDWQTILNRDDGSGIAVKALTRVQKGWGQGIISSLQSQKREIPDYWED 69
+++ K + GN+WQ IL+RDDGSGIA+K+L+RV+KGWGQG ISS Q Q+ + DYWED
Sbjct: 814 IHQKKHNKYSGNNWQNILHRDDGSGIALKSLSRVKKGWGQGDISSFQPQRVDYLDYWED 872
>ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g17140 gi|110737729|dbj|BAF00803.1| hypothetical
protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 185 bits (470), Expect = 5e-45
Identities = 92/179 (51%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
Frame = -1
Query: 602 KEALYIIMLNELLAGGKTLEANQVFIAAMDRGFDVRGFSYKDLIEGLCNEEKLKQARSTL 423
KE LY +M NELLA G+ L+A ++ A +DRGF++ F YKDL+E LC +++L+ A L
Sbjct: 697 KEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGIL 756
Query: 422 HEMIDKEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNT 243
H+MID+ Y FDPA+ MP+ID LGK GNK EA+ A+ MM MAS G + +PN
Sbjct: 757 HKMIDRGYGFDPAALMPVIDGLGKMGNKKEANSFADKMMEMASVGEVANKV---DPNARD 813
Query: 242 LNRGK-PQTDGNDWQTILNRDDGSGIAVKALTRVQKGWGQGIISSLQSQKREIPDYWED 69
+++ K + GN+WQ IL+RDDGSGIA+++L+RV+KGWGQG ISS Q + + DYWED
Sbjct: 814 IHQKKHNKNGGNNWQNILHRDDGSGIALRSLSRVKKGWGQGDISSFQPPRVDYLDYWED 872
>ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like
[Cucumis sativus]
Length = 875
Score = 183 bits (465), Expect = 2e-44
Identities = 95/177 (53%), Positives = 121/177 (68%)
Frame = -1
Query: 602 KEALYIIMLNELLAGGKTLEANQVFIAAMDRGFDVRGFSYKDLIEGLCNEEKLKQARSTL 423
KE+LY M NELLAGG+TL+A ++F AA+DR ++ F Y+DLIE LC + KL A L
Sbjct: 702 KESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFIL 761
Query: 422 HEMIDKEYQFDPASFMPLIDALGKNGNKHEADELAEMMMGMASDGRAMKRTHHKEPNKNT 243
H+M+DK+Y FDPASFMP+ID LGK G+KH ADE AE MM MAS+ ++ NKN
Sbjct: 762 HKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMASE-----TDFNEHENKNI 816
Query: 242 LNRGKPQTDGNDWQTILNRDDGSGIAVKALTRVQKGWGQGIISSLQSQKREIPDYWE 72
R D +DWQ I++R+DGSGIA K L RV KGWGQG I++ Q QK D+W+
Sbjct: 817 RGR-LNNNDESDWQKIVHRNDGSGIAQKTLKRVLKGWGQGSIATCQPQKFSTRDHWD 872