BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022997
         (1622 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containi...   452   e-124
emb|CBI38862.3| unnamed protein product [Vitis vinifera]              447   e-123
ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|2...   393   e-107
ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containi...   388   e-105
ref|XP_003623723.1| Pentatricopeptide repeat-containing protein ...   381   e-103

>ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like
            [Vitis vinifera]
          Length = 352

 Score =  452 bits (1163), Expect = e-124
 Identities = 230/341 (67%), Positives = 271/341 (79%)
 Frame = +3

Query: 42   WVKIGPNITEAQEKAISQLPPRMSKRDKAFMKQIICFDYSEKTGVTLSSILRSWVKIMKP 221
            W++IGPNITEAQ+  ISQ+  +M+KR KA +KQIICF   E++   LS +L +WVKIMKP
Sbjct: 11   WIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERS---LSDLLAAWVKIMKP 67

Query: 222  RRADWLLVLKEMSKLEVPLVFEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAENTL 401
            RRADWL VLKE+ +L+ PL+ EV E ALLE+SFEANIRDYTK+IDGY KQNRL DAENTL
Sbjct: 68   RRADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTL 127

Query: 402  QAMKKRGFTCDQITLTVLINMYSKAGSLEKAEEIFEELKLLGLPLDKRAYGAMIMAYVRA 581
             AMK+RGF CDQ+TLT +INMYSKAG+LE AE+ FEE+KLLG PLDKR+YG+MIMAY+RA
Sbjct: 128  SAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRA 187

Query: 582  GMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDVKLC 761
            GMPD+GEIL+ EMEA+EIYAG+EVYKALLRAYS   +  GAQRVFDAIQFA ISPDVKLC
Sbjct: 188  GMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLC 247

Query: 762  ALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVSLMLAAYXXXXXXXXXXXXXXXXXX 941
            ALLINA+RVAGQ+  A   FENMRR+GL P+DK ++LMLAAY                  
Sbjct: 248  ALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLER 307

Query: 942  XNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEIKCE 1064
               VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE  CE
Sbjct: 308  DGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKEASCE 348


>emb|CBI38862.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score =  447 bits (1150), Expect = e-123
 Identities = 228/337 (67%), Positives = 269/337 (79%)
 Frame = +3

Query: 42   WVKIGPNITEAQEKAISQLPPRMSKRDKAFMKQIICFDYSEKTGVTLSSILRSWVKIMKP 221
            W++IGPNITEAQ+  ISQ+  +M+KR KA +KQIICF   E++   LS +L +WVKIMKP
Sbjct: 11   WIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERS---LSDLLAAWVKIMKP 67

Query: 222  RRADWLLVLKEMSKLEVPLVFEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAENTL 401
            RRADWL VLKE+ +L+ PL+ EV E ALLE+SFEANIRDYTK+IDGY KQNRL DAENTL
Sbjct: 68   RRADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTL 127

Query: 402  QAMKKRGFTCDQITLTVLINMYSKAGSLEKAEEIFEELKLLGLPLDKRAYGAMIMAYVRA 581
             AMK+RGF CDQ+TLT +INMYSKAG+LE AE+ FEE+KLLG PLDKR+YG+MIMAY+RA
Sbjct: 128  SAMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRA 187

Query: 582  GMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDVKLC 761
            GMPD+GEIL+ EMEA+EIYAG+EVYKALLRAYS   +  GAQRVFDAIQFA ISPDVKLC
Sbjct: 188  GMPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLC 247

Query: 762  ALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVSLMLAAYXXXXXXXXXXXXXXXXXX 941
            ALLINA+RVAGQ+  A   FENMRR+GL P+DK ++LMLAAY                  
Sbjct: 248  ALLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLER 307

Query: 942  XNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKE 1052
               VLGKE SE+L  WF+RLGVV EV LVL+EY+AKE
Sbjct: 308  DGIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKE 344


>ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|222861503|gb|EEE99045.1|
            predicted protein [Populus trichocarpa]
          Length = 407

 Score =  393 bits (1010), Expect = e-107
 Identities = 203/335 (60%), Positives = 253/335 (75%)
 Frame = +3

Query: 42   WVKIGPNITEAQEKAISQLPPRMSKRDKAFMKQIICFDYSEKTGVTLSSILRSWVKIMKP 221
            WV+IGPNI E Q++AISQLP +M+KR KA M+QIICF+  +K G +L  +L +WVKIMKP
Sbjct: 75   WVEIGPNIPEEQKQAISQLPFKMTKRCKALMRQIICFN--DKKG-SLRGLLSAWVKIMKP 131

Query: 222  RRADWLLVLKEMSKLEVPLVFEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAENTL 401
            RR DWL +LKE++K+E PL  EV E ALLE+SFEAN+RDYTK+I  Y   N+L +AE T 
Sbjct: 132  RRKDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIHFYGMNNQLEEAERTR 191

Query: 402  QAMKKRGFTCDQITLTVLINMYSKAGSLEKAEEIFEELKLLGLPLDKRAYGAMIMAYVRA 581
             AM++RGF  DQ+TLT +I+MYSK G+L  AEE FEELKLLG PLD+R+YG+MIMAY+RA
Sbjct: 192  LAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPLDRRSYGSMIMAYIRA 251

Query: 582  GMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDVKLC 761
            GMP++GE++L EM+AQEI AG EVYKALLRAYS +G+  GAQRVFDAIQ A I PD + C
Sbjct: 252  GMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVFDAIQLAGIPPDDRTC 311

Query: 762  ALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVSLMLAAYXXXXXXXXXXXXXXXXXX 941
            A+L+NA+ +AGQS  A   FENM RAG+ P+D+CV+L+LAAY                  
Sbjct: 312  AVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKENKLNQALDFLIGLER 371

Query: 942  XNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAA 1046
               ++GKE SEVL  WF RLGVV EV LVL+EYAA
Sbjct: 372  EKLIIGKEASEVLAEWFGRLGVVKEVELVLREYAA 406


>ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like
            [Cucumis sativus] gi|449480346|ref|XP_004155867.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g01970-like [Cucumis sativus]
          Length = 404

 Score =  388 bits (997), Expect = e-105
 Identities = 201/338 (59%), Positives = 251/338 (74%)
 Frame = +3

Query: 42   WVKIGPNITEAQEKAISQLPPRMSKRDKAFMKQIICFDYSEKTGVTLSSILRSWVKIMKP 221
            WV++G +ITE Q++AISQLPP+M+KR KA MKQIICF  S + G  LS +L +WV+IMKP
Sbjct: 68   WVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICF--SPQKG-ELSDMLAAWVRIMKP 124

Query: 222  RRADWLLVLKEMSKLEVPLVFEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAENTL 401
             RADWLLVLK +  L  PL  +V E AL E +FEAN RDYTK+I  Y KQN+L DAE  L
Sbjct: 125  ERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGKQNQLEDAEKVL 184

Query: 402  QAMKKRGFTCDQITLTVLINMYSKAGSLEKAEEIFEELKLLGLPLDKRAYGAMIMAYVRA 581
             +M++RGF CDQITLT +I++YSKA  L  A++ FEELKLL  PLDKR++GAMIMAYVRA
Sbjct: 185  LSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRSFGAMIMAYVRA 244

Query: 582  GMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDVKLC 761
            G P+ GE +L EM+A++IYAG EVYKALLRAYS +GN  GAQRVFDAIQ A I+PD KLC
Sbjct: 245  GFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQLAAITPDEKLC 304

Query: 762  ALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVSLMLAAYXXXXXXXXXXXXXXXXXX 941
             LLINA+ +AGQS  A+  F+NMRRAG+ PSDKC++L L+AY                  
Sbjct: 305  GLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNSALELLIDLEK 364

Query: 942  XNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYAAKEI 1055
             N ++GKE S++L  W +RLGVV+EV +VL+EY  KE+
Sbjct: 365  DNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEV 402


>ref|XP_003623723.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498738|gb|AES79941.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  381 bits (978), Expect = e-103
 Identities = 195/334 (58%), Positives = 250/334 (74%)
 Frame = +3

Query: 42   WVKIGPNITEAQEKAISQLPPRMSKRDKAFMKQIICFDYSEKTGVTLSSILRSWVKIMKP 221
            W +I  +ITE Q++AI++LP RM KR KA M+QIICF  SE+ G  L  +LR+WV+IMKP
Sbjct: 88   WNEIRNDITEEQKQAIAKLPFRMEKRCKAVMRQIICF--SEEKG-RLCDVLRAWVEIMKP 144

Query: 222  RRADWLLVLKEMSKLEVPLVFEVTEYALLEDSFEANIRDYTKLIDGYAKQNRLHDAENTL 401
             RADWL VLKE+  ++ PL  EV E+AL+E+SFE N+RDYTKLI  Y+K+N+L  AEN  
Sbjct: 145  TRADWLSVLKELKNMDHPLYLEVAEHALVEESFEPNLRDYTKLIHYYSKENQLEAAENIF 204

Query: 402  QAMKKRGFTCDQITLTVLINMYSKAGSLEKAEEIFEELKLLGLPLDKRAYGAMIMAYVRA 581
              MK+RGF CDQ+ LT +++MYSKAG L++AEE FEE+KLLG PLDKR+YG+MIMAY+RA
Sbjct: 205  TLMKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIKLLGEPLDKRSYGSMIMAYIRA 264

Query: 582  GMPDRGEILLGEMEAQEIYAGKEVYKALLRAYSTLGNTLGAQRVFDAIQFARISPDVKLC 761
            GMP++GE LL EM+AQ+IYAG EVYKALLRAYS +GN  GAQRVFDAIQ A I PD K+C
Sbjct: 265  GMPEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAEGAQRVFDAIQLAGIIPDDKMC 324

Query: 762  ALLINAHRVAGQSDGARRVFENMRRAGLTPSDKCVSLMLAAYXXXXXXXXXXXXXXXXXX 941
            +LLI A+ +AGQS  AR  FENM+RAG+ P+DKC+S +L AY                  
Sbjct: 325  SLLIYAYSMAGQSQKARIAFENMKRAGIEPTDKCISSVLVAYEKENMLNTALEFLIELER 384

Query: 942  XNFVLGKEGSEVLVCWFRRLGVVDEVALVLKEYA 1043
               ++ +E S +L  WFR+LGVV+EV LVL+++A
Sbjct: 385  DGIMVKEETSRILAGWFRKLGVVEEVELVLRDFA 418