BLASTX nr result
ID: Coptis21_contig00022829
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00022829
(637 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat... 143 3e-32
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 120 2e-25
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm... 115 7e-24
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 114 2e-23
emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera] 114 2e-23
>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
Length = 480
Score = 143 bits (360), Expect = 3e-32
Identities = 65/191 (34%), Positives = 117/191 (61%)
Frame = -1
Query: 580 MLSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVAWD 401
+LS+ GR L+KS+I M +Y+ IY WP+ ++ + ++NF+WSGD K TV+W
Sbjct: 257 LLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWK 316
Query: 400 KVCKPYREGGLGIRKLGEVNRAMLMKLAWRFLEGKDDFAIFMQNKYLTRDGDVIGYYRPT 221
+C+P+ GGL I+ +N ++++ LAW+F +A M +++L + G + +Y +
Sbjct: 317 VMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWAALMHHRFL-KHGTPLQHYFLS 375
Query: 220 SIWQGIKEAMREVRPRTQWAIGSGNLVDIWRDNWLGSVSLKDALNLTNHELKDCNSKVST 41
S+W GIKE + + + W +G+G +++W DNWLG + L D+LN++ + V+
Sbjct: 376 SMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLG-IRLVDSLNISPTLHTKFRASVAD 434
Query: 40 LIVNGSVQIPS 8
+IVNG++ +P+
Sbjct: 435 VIVNGALSLPA 445
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 120 bits (302), Expect = 2e-25
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Frame = -1
Query: 586 GRMLSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVA 407
GR LSL GR TL K+V+SS+P++ MS P+S + +K R+FLW + +K ++
Sbjct: 306 GRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLIS 365
Query: 406 WDKVCKPYREGGLGIRKLGEVNRAMLMKLAWRFLEGKDD-FAIFMQNKYLTRDGDVIGYY 230
W +VCKP EGGLGIRK ++N+A+L K+ WR ++ +A M+ Y +D +
Sbjct: 366 WKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWT 425
Query: 229 RPTSI----WQGIKEAMRE-VRPRTQWAIGSGNLVDIWRDNWLGSVSLKDAL 89
+ S+ W+ + MRE V P W IG G + W D WL ++ L + L
Sbjct: 426 KVRSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLAELL 477
>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
gi|223537826|gb|EEF39443.1| conserved hypothetical
protein [Ricinus communis]
Length = 303
Score = 115 bits (288), Expect = 7e-24
Identities = 55/140 (39%), Positives = 84/140 (60%)
Frame = -1
Query: 586 GRMLSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVA 407
GR L + GR LI SVI + ++ +Y+WP S++K EKA+RNFLW+G S KK VTV
Sbjct: 168 GRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIEKAIRNFLWTGSVSYKKLVTVK 227
Query: 406 WDKVCKPYREGGLGIRKLGEVNRAMLMKLAWRFLEGKDDFAIFMQNKYLTRDGDVIGYYR 227
W CKP EGG+G+++L +NR ML ++AW+F F++++YL G R
Sbjct: 228 WGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSFVYRFLRSRYLVAS----GVPR 283
Query: 226 PTSIWQGIKEAMREVRPRTQ 167
+ +W I+E +++ +Q
Sbjct: 284 SSLVWPSIRELYSKLQATSQ 303
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 114 bits (285), Expect = 2e-23
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 7/187 (3%)
Frame = -1
Query: 583 RMLSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVAW 404
+ LS GR TL K+V+SSMP+++MS PQS++ ++ R FLW KK V W
Sbjct: 30 KTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKW 89
Query: 403 DKVCKPYREGGLGIRKLGEVNRAMLMKLAWRFLEGKDD-FAIFMQNKYLTRDGDVIGYYR 227
KVC P +EGGLG+R +NRA++ K+ WR L+ K+ + + +Q KY + +
Sbjct: 90 SKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLI 149
Query: 226 P----TSIWQGIKEAMREVRPR-TQWAIGSGNLVDIWRDNWLGSVSLKDALNLTNHEL-K 65
P +S W+ I +R+V W G G + W D W VS K L L N E
Sbjct: 150 PKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRW---VSGKPLLELDNGERPT 206
Query: 64 DCNSKVS 44
DC++ V+
Sbjct: 207 DCDTVVA 213
>emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera]
Length = 4128
Score = 114 bits (284), Expect = 2e-23
Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Frame = -1
Query: 577 LSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVAWDK 398
LS GR TLIKS +SS+PIY MS++ P+ V EK R+FLW G KK V W
Sbjct: 1455 LSKGGRLTLIKSTLSSLPIYLMSLFVIPRKVCARIEKIQRDFLWGGGALEKKPHLVNWSA 1514
Query: 397 VCKPYREGGLGIRKLGEVNRAMLMKLAWRF-LEGKDDFAIFMQNKYLTRDG-----DVIG 236
VC R+GGLGIR L +NRA+L K W+F +E + + +KY +G +V G
Sbjct: 1515 VCTDMRQGGLGIRSLVALNRALLGKWNWKFSIERNSLWKQVIIDKYGEEEGGWCSKEVRG 1574
Query: 235 YYRPTSIWQGIKEAMREVRPRTQWAIGSGNLVDIWRDNWLGSVSLKDA 92
Y +W+ I++ +R R+++ +G+G V W+D W +L+DA
Sbjct: 1575 AY-GVGLWKAIRKDWEIIRSRSRFIVGNGRKVKFWKDLWCEDQALEDA 1621
Score = 110 bits (276), Expect = 2e-22
Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Frame = -1
Query: 577 LSLQGRCTLIKSVISSMPIYNMSIYKWPQSVIKDAEKAMRNFLWSGDPSIKKGVTVAWDK 398
LS GR TL+KS +SS+P Y +S++ P+ V EK R+FLW G KK V+W
Sbjct: 3193 LSKGGRLTLLKSTLSSLPTYFLSLFVIPKRVCARLEKIQRDFLWGGGALEKKPHLVSWKV 3252
Query: 397 VCKPYREGGLGIRKLGEVNRAMLMKLAWRFL-EGKDDFAIFMQNKYLTRDG-----DVIG 236
VC ++GGLGIR L N+A+L K WRF E + + + +KY ++G D
Sbjct: 3253 VCADKKKGGLGIRSLATFNKALLGKWLWRFANENEPLWKQIILSKYDLQEGGWCSKDARN 3312
Query: 235 YYRPTSIWQGIKEAMREVRPRTQWAIGSGNLVDIWRDNWLGSVSLKD 95
+Y +W+ I++ R +++ IG G V W+D W G+ SLK+
Sbjct: 3313 WY-GVGVWKAIRKGWENFRSHSRFIIGDGTKVKFWKDLWCGNQSLKE 3358