BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022737
         (468 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAL03676.1| RNA polymerase beta chain [Bowenia serrulata]          69   5e-10
ref|YP_007474667.1| RNA polymerase beta subunit (chloroplast) [C...    66   3e-09
gb|AFM54207.1| RpoB (chloroplast) [Zamia furfuracea]                   66   3e-09
gb|ABU85267.1| RNA polymerase beta subunit [Cycas micronesica]         66   3e-09
ref|YP_001312184.1| RNA polymerase beta chain [Cycas taitungensi...    66   3e-09

>dbj|BAL03676.1| RNA polymerase beta chain [Bowenia serrulata]
          Length = 1072

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 8/54 (14%)
 Frame = +1

Query: 7   PNNSIFALP---TPQD-----PLSQVLD*TNPLTQVVHRRKLSYLGPGGLTGRT 144
           PNNS+ + P   T QD     PLSQ LD TNPLT++VHRRKLSYLGPGGLTGRT
Sbjct: 354 PNNSVTSTPLTTTFQDFFGSHPLSQFLDQTNPLTEIVHRRKLSYLGPGGLTGRT 407


>ref|YP_007474667.1| RNA polymerase beta subunit (chloroplast) [Cycas revoluta]
           gi|372863143|gb|AEX99216.1| RNA polymerase beta subunit
           (chloroplast) [Cycas revoluta]
          Length = 1072

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 8/54 (14%)
 Frame = +1

Query: 7   PNNSIFALP---TPQD-----PLSQVLD*TNPLTQVVHRRKLSYLGPGGLTGRT 144
           PNN + + P   T QD     PLSQ LD TNPLT++VHRRKLSYLGPGGLTGRT
Sbjct: 354 PNNLVTSTPLTTTFQDFFGSHPLSQFLDQTNPLTEIVHRRKLSYLGPGGLTGRT 407


>gb|AFM54207.1| RpoB (chloroplast) [Zamia furfuracea]
          Length = 1078

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 8/54 (14%)
 Frame = +1

Query: 7   PNNSIFALP---TPQD-----PLSQVLD*TNPLTQVVHRRKLSYLGPGGLTGRT 144
           PNN + + P   T QD     PLSQ LD TNPLT++VHRRKLSYLGPGGLTGRT
Sbjct: 360 PNNLVTSTPLTTTFQDFFGSHPLSQFLDQTNPLTEIVHRRKLSYLGPGGLTGRT 413


>gb|ABU85267.1| RNA polymerase beta subunit [Cycas micronesica]
          Length = 1066

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 8/54 (14%)
 Frame = +1

Query: 7   PNNSIFALP---TPQD-----PLSQVLD*TNPLTQVVHRRKLSYLGPGGLTGRT 144
           PNN + + P   T QD     PLSQ LD TNPLT++VHRRKLSYLGPGGLTGRT
Sbjct: 348 PNNLVTSTPLTTTFQDFFGSHPLSQFLDQTNPLTEIVHRRKLSYLGPGGLTGRT 401


>ref|YP_001312184.1| RNA polymerase beta chain [Cycas taitungensis]
           gi|158513731|sp|A6H5F9.1|RPOB_CYCTA RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|149941501|dbj|BAF64925.1| RNA polymerase beta chain
           (chloroplast) [Cycas taitungensis]
          Length = 1072

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 8/54 (14%)
 Frame = +1

Query: 7   PNNSIFALP---TPQD-----PLSQVLD*TNPLTQVVHRRKLSYLGPGGLTGRT 144
           PNN + + P   T QD     PLSQ LD TNPLT++VHRRKLSYLGPGGLTGRT
Sbjct: 354 PNNLVTSTPLTTTFQDFFGSHPLSQFLDQTNPLTEIVHRRKLSYLGPGGLTGRT 407