BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022580
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37346.3| unnamed protein product [Vitis vinifera]              286   4e-75
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-...   285   1e-74
emb|CBI29513.3| unnamed protein product [Vitis vinifera]              284   1e-74
ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-...   280   3e-73
ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis t...   280   3e-73

>emb|CBI37346.3| unnamed protein product [Vitis vinifera]
          Length = 490

 Score =  286 bits (732), Expect = 4e-75
 Identities = 163/276 (59%), Positives = 189/276 (68%), Gaps = 13/276 (4%)
 Frame = +2

Query: 20  MVKQKQQIISRFFAXXXXXXXXXXXXXXXXXXXXXX------------KITATASFSSSK 163
           M KQKQQ+ISRFFA                                  KI+ T +FS SK
Sbjct: 1   MGKQKQQVISRFFAPKSKAPSSSSSSIPSSPSPSPSPSSLPNPPTPPPKISTTVTFSPSK 60

Query: 164 RLRSTQLTSPQEKKPKLSPHTQNSINPSLHQKFLKKXXXXXXXXXXXXXXXXXXNPKYTP 343
           RL S+ + SP  K PK +P   + I+PSLHQKF++K                    KYTP
Sbjct: 61  RLPSSHV-SPSTKPPK-APKISHPIDPSLHQKFVQKLLQPSSSTPTKLPLP---TTKYTP 115

Query: 344 LEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPTFRLN 523
           LEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVLGIYAH DHNFLTASIPTFRLN
Sbjct: 116 LEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPTFRLN 175

Query: 524 VHVRRLVSLGYKVGVVKQTETAAIKSHGANKLGPFSRGLSALYTKATLEAAEDMXXXXXX 703
           VHVRRLVS G+KVGVVKQTETAAIK+HG+NKLGPF RGLSALYTKATLEAAED+      
Sbjct: 176 VHVRRLVSAGFKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEDV--GGGE 233

Query: 704 XXXXXFSNYLMCVVEKGVGIDD-KECGVEGGFDVRI 808
                ++NYL+CVVEKG+ +++ K+CGV GGFDVRI
Sbjct: 234 EECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRI 269


>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
          Length = 1137

 Score =  285 bits (728), Expect = 1e-74
 Identities = 162/276 (58%), Positives = 189/276 (68%), Gaps = 13/276 (4%)
 Frame = +2

Query: 20  MVKQKQQIISRFFAXXXXXXXXXXXXXXXXXXXXXX------------KITATASFSSSK 163
           M KQKQQ+ISRFFA                                  KI+ T +FS SK
Sbjct: 1   MGKQKQQVISRFFAPKPKAPSSSSSSIPSSPSPSPSPSSLPNPPTPPPKISTTVTFSPSK 60

Query: 164 RLRSTQLTSPQEKKPKLSPHTQNSINPSLHQKFLKKXXXXXXXXXXXXXXXXXXNPKYTP 343
           RL S+ + SP  K PK +P   + I+PSLHQKF++K                    KYTP
Sbjct: 61  RLPSSHV-SPSTKPPK-APKISHPIDPSLHQKFVQKLLEPSSSTPTKLPLP---TTKYTP 115

Query: 344 LEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPTFRLN 523
           LEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVLGIYAH DHNFLTASIPTFRLN
Sbjct: 116 LEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLGIYAHVDHNFLTASIPTFRLN 175

Query: 524 VHVRRLVSLGYKVGVVKQTETAAIKSHGANKLGPFSRGLSALYTKATLEAAEDMXXXXXX 703
           VHVRRLVS G+KVGVVKQTETAAIK+HG+NKLGPF RGLSALYTKATLEAAE++      
Sbjct: 176 VHVRRLVSAGFKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEEV--GGGE 233

Query: 704 XXXXXFSNYLMCVVEKGVGIDD-KECGVEGGFDVRI 808
                ++NYL+CVVEKG+ +++ K+CGV GGFDVRI
Sbjct: 234 EECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRI 269


>emb|CBI29513.3| unnamed protein product [Vitis vinifera]
          Length = 470

 Score =  284 bits (727), Expect = 1e-74
 Identities = 163/278 (58%), Positives = 188/278 (67%), Gaps = 15/278 (5%)
 Frame = +2

Query: 20  MVKQKQQIISRFFAXXXXXXXXXXXXXXXXXXXXXX--------------KITATASFSS 157
           M KQKQQ+ISRFFA                                    KI+ T +FS 
Sbjct: 1   MGKQKQQVISRFFAPKSKAPSSSSFSIPSSPSPSPSPSPSSLPNPPTPPPKISTTVTFSP 60

Query: 158 SKRLRSTQLTSPQEKKPKLSPHTQNSINPSLHQKFLKKXXXXXXXXXXXXXXXXXXNPKY 337
           SKRL S+ + SP  K PK +P   + I+PSLHQKFL+K                    KY
Sbjct: 61  SKRLPSSHV-SPSTKPPK-APKISHPIDPSLHQKFLQKLLEPSSSTPTKLPLP---TTKY 115

Query: 338 TPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPTFR 517
           TPLEQQV+ LK+KYPDVLLM+EVGY+YRFFGEDAEIAARVL IYAH DHNFLTASIPTFR
Sbjct: 116 TPLEQQVVDLKQKYPDVLLMVEVGYRYRFFGEDAEIAARVLAIYAHVDHNFLTASIPTFR 175

Query: 518 LNVHVRRLVSLGYKVGVVKQTETAAIKSHGANKLGPFSRGLSALYTKATLEAAEDMXXXX 697
           LNVHVRRLVS G+KVGVVKQTETAAIK+HG+NKLGPF RGLSALYTKATLEAAED+    
Sbjct: 176 LNVHVRRLVSAGFKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEDV--GG 233

Query: 698 XXXXXXXFSNYLMCVVEKGVGIDD-KECGVEGGFDVRI 808
                  ++NYL+CVVEKG+ +++ K+CGV GGFDVRI
Sbjct: 234 GEEECGSYNNYLVCVVEKGISVENSKDCGVGGGFDVRI 271


>ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
          Length = 1094

 Score =  280 bits (716), Expect = 3e-73
 Identities = 159/278 (57%), Positives = 187/278 (67%), Gaps = 15/278 (5%)
 Frame = +2

Query: 20  MVKQKQQIISRFFAXXXXXXXXXXXXXXXXXXXXXXKITATASFSSSKRLRST----QLT 187
           M KQKQQ+ISRFFA                      K++AT +FS SKRL S+    QLT
Sbjct: 1   MGKQKQQVISRFFAPKPKSPSLSSSSSSPA------KVSATVTFSPSKRLISSAIASQLT 54

Query: 188 SPQE-KKPKLSPHTQNSI----NPSLHQKFLKKXXXXXXXXXXXXXXXXXXNP------K 334
            P+  K+PKLSPHT N +    NPSLHQ+FL K                  +       K
Sbjct: 55  PPKSSKRPKLSPHTHNPLPSIPNPSLHQRFLDKLLEPTDDSFQPSNQNPRTSNGADPKYK 114

Query: 335 YTPLEQQVLQLKEKYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPTF 514
           YTPLEQQV+ LK++YPDVLLM+EVGY+YRFFG+DA IAARVLGIYAH DHNF+TASIPTF
Sbjct: 115 YTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAVIAARVLGIYAHLDHNFMTASIPTF 174

Query: 515 RLNVHVRRLVSLGYKVGVVKQTETAAIKSHGANKLGPFSRGLSALYTKATLEAAEDMXXX 694
           RLNVHVRRLVS GYKVGVVKQTETAAIK+HG+NKLGPF RGLSALYTKATLEAA+D+   
Sbjct: 175 RLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQDLGGA 234

Query: 695 XXXXXXXXFSNYLMCVVEKGVGIDDKECGVEGGFDVRI 808
                    SNYL C+VE  + + + +C +E G DV+I
Sbjct: 235 EEGCAGE--SNYLFCLVENSMSVQNVDCRIENGVDVKI 270


>ref|NP_194284.2| DNA mismatch repair protein Msh3 [Arabidopsis thaliana]
           gi|12644077|sp|O65607.2|MSH3_ARATH RecName: Full=DNA
           mismatch repair protein MSH3; Short=AtMSH3; AltName:
           Full=MutS protein homolog 3 gi|3319876|emb|CAA07684.1|
           Msh3 protein [Arabidopsis thaliana]
           gi|332659675|gb|AEE85075.1| DNA mismatch repair protein
           Msh3 [Arabidopsis thaliana]
          Length = 1081

 Score =  280 bits (716), Expect = 3e-73
 Identities = 157/266 (59%), Positives = 184/266 (69%), Gaps = 3/266 (1%)
 Frame = +2

Query: 20  MVKQKQQIISRFFAXXXXXXXXXXXXXXXXXXXXXXKITATASFSSSKR-LRSTQLTSPQ 196
           M KQKQQ ISRFFA                      KI+AT SFS SKR L S  L +  
Sbjct: 1   MGKQKQQTISRFFAPKPKSPTHEPNPVAESSTPPP-KISATVSFSPSKRKLLSDHLAAAS 59

Query: 197 EKKPKLSPHTQNSI-NPSLHQKFLKKXXXXXXXXXXXXXXXXXXNPKYTPLEQQVLQLKE 373
            KKPKLSPHTQN + +P+LHQ+FL++                  + KYTPLEQQV++LK 
Sbjct: 60  PKKPKLSPHTQNPVPDPNLHQRFLQRFLEPSPEEYVPETSS---SRKYTPLEQQVVELKS 116

Query: 374 KYPDVLLMIEVGYKYRFFGEDAEIAARVLGIYAHNDHNFLTASIPTFRLNVHVRRLVSLG 553
           KYPDV+LM+EVGY+YRFFGEDAEIAARVLGIYAH DHNF+TAS+PTFRLN HVRRLV+ G
Sbjct: 117 KYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPTFRLNFHVRRLVNAG 176

Query: 554 YKVGVVKQTETAAIKSHGANKLGPFSRGLSALYTKATLEAAEDMXXXXXXXXXXXF-SNY 730
           YK+GVVKQTETAAIKSHGAN+ GPF RGLSALYTKATLEAAED+             SN+
Sbjct: 177 YKIGVVKQTETAAIKSHGANRTGPFFRGLSALYTKATLEAAEDISGGCGGEEGFGSQSNF 236

Query: 731 LMCVVEKGVGIDDKECGVEGGFDVRI 808
           L+CVV++ V  +   CG+E  FDVR+
Sbjct: 237 LVCVVDERVKSETLGCGIEMSFDVRV 262