BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022503
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp....   187   8e-46
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   187   8e-46
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   187   8e-46
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   186   1e-45
ref|NP_196448.2| pentatricopeptide repeat-containing protein [Ar...   184   5e-45

>ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319188|gb|EFH49610.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1281

 Score =  187 bits (475), Expect = 8e-46
 Identities = 88/139 (63%), Positives = 107/139 (76%)
 Frame = +2

Query: 11  DKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEVDKAFELVE 190
           DKFTLTP+LQ YCN GK + AL VFN I  RGW+DEH+ TIL+VSF KWG+VDKAFEL+E
Sbjct: 213 DKFTLTPVLQVYCNNGKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIE 272

Query: 191 KMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKK 370
            +E  ++  N KT C LIHGF KESR+DKA QLFEKM+ +  NPD+ LY VLI GLCK K
Sbjct: 273 MLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPDIALYDVLIGGLCKHK 332

Query: 371 ELDKALQLYTQMKSTGIYP 427
           +L+ AL LY ++K +GI P
Sbjct: 333 DLEMALSLYLEIKRSGIPP 351



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/105 (28%), Positives = 50/105 (47%)
 Frame = +2

Query: 113 DEHVFTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLF 292
           D   + +L+ +  K     +A  L  +M    + P+  T  S+I G+ KE  +D+ L   
Sbjct: 613 DVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATYNSMIDGWCKEGEIDRGLSCI 672

Query: 293 EKMQILAFNPDLPLYSVLIEGLCKKKELDKALQLYTQMKSTGIYP 427
            +M     NPD+  Y+ LI GLC  +   +A+  + +MK    YP
Sbjct: 673 VRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYP 717


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
           gi|296085293|emb|CBI29025.3| unnamed protein product
           [Vitis vinifera]
          Length = 854

 Score =  187 bits (475), Expect = 8e-46
 Identities = 89/142 (62%), Positives = 111/142 (78%)
 Frame = +2

Query: 2   WDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEVDKAFE 181
           W+ DK+TLT +LQAYCN+ KF +AL VFN I+ RGWVD HV +IL+++FSK GEVDKAFE
Sbjct: 230 WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFE 289

Query: 182 LVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLC 361
           L+E+ME L +  NEKT C LIHGF ++SRVDKALQLF+KMQ   F PD+ +Y  LI GLC
Sbjct: 290 LIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 349

Query: 362 KKKELDKALQLYTQMKSTGIYP 427
            KKE++KAL L ++MK  GI P
Sbjct: 350 AKKEIEKALHLLSEMKELGIDP 371



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
 Frame = +2

Query: 68  EALIVFNRIFDRGWVDEHV-FTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLI 244
           +AL +F  I  RG+  + V +  L+  F K   V +A +++++M    + P+  T   LI
Sbjct: 615 QALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 674

Query: 245 HGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKELDKALQLYTQMKSTGIY 424
            G+ K   +D+A     +M      P++  Y+ LI+GLC     D A+ L+ +M+  G  
Sbjct: 675 DGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCS 734

Query: 425 P 427
           P
Sbjct: 735 P 735


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  187 bits (475), Expect = 8e-46
 Identities = 89/142 (62%), Positives = 111/142 (78%)
 Frame = +2

Query: 2   WDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEVDKAFE 181
           W+ DK+TLT +LQAYCN+ KF +AL VFN I+ RGWVD HV +IL+++FSK GEVDKAFE
Sbjct: 190 WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGEVDKAFE 249

Query: 182 LVEKMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLC 361
           L+E+ME L +  NEKT C LIHGF ++SRVDKALQLF+KMQ   F PD+ +Y  LI GLC
Sbjct: 250 LIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLC 309

Query: 362 KKKELDKALQLYTQMKSTGIYP 427
            KKE++KAL L ++MK  GI P
Sbjct: 310 AKKEIEKALHLLSEMKELGIDP 331



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
 Frame = +2

Query: 68  EALIVFNRIFDRGWVDEHV-FTILMVSFSKWGEVDKAFELVEKMEGLNMNPNEKTLCSLI 244
           +AL +F  I  RG+  + V +  L+  F K   V +A +++++M    + P+  T   LI
Sbjct: 575 QALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLI 634

Query: 245 HGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKELDKALQLYTQMKSTGIY 424
            G+ K   +D+A     +M      P++  Y+ LI+GLC     D A+ L+ +M+  G  
Sbjct: 635 DGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCS 694

Query: 425 P 427
           P
Sbjct: 695 P 695


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  186 bits (473), Expect = 1e-45
 Identities = 88/138 (63%), Positives = 105/138 (76%)
 Frame = +2

Query: 14  KFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEVDKAFELVEK 193
           K+TLTP+LQ YCNAGKF EAL VFN I D GW+D +VF+IL++SFSKWG+VDK+FE +EK
Sbjct: 10  KYTLTPVLQVYCNAGKFDEALNVFNEIQDHGWLDAYVFSILVLSFSKWGQVDKSFEFIEK 69

Query: 194 MEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKE 373
           ME  N   NEKT C+LIHGF K+SRVDK +QLF KMQ    +PD+ LY VLI G C  K+
Sbjct: 70  MEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCSNKK 129

Query: 374 LDKALQLYTQMKSTGIYP 427
           LDKAL LY +MK   I P
Sbjct: 130 LDKALSLYAEMKMLKIQP 147


>ref|NP_196448.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635617|sp|P0C8Q6.1|PP368_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g08310, mitochondrial; Flags: Precursor
           gi|332003898|gb|AED91281.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 832

 Score =  184 bits (468), Expect = 5e-45
 Identities = 87/139 (62%), Positives = 106/139 (76%)
 Frame = +2

Query: 11  DKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVDEHVFTILMVSFSKWGEVDKAFELVE 190
           DKFTLTP+LQ YCN GK + AL VFN I  RGW+DEH+ TIL+VSF KWG+VDKAFEL+E
Sbjct: 213 DKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFCKWGQVDKAFELIE 272

Query: 191 KMEGLNMNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKK 370
            +E  ++  N KT C LIHGF KESR+DKA QLFEKM+ +  N D+ LY VLI GLCK K
Sbjct: 273 MLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHK 332

Query: 371 ELDKALQLYTQMKSTGIYP 427
           +L+ AL LY ++K +GI P
Sbjct: 333 DLEMALSLYLEIKRSGIPP 351



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
 Frame = +2

Query: 32   ILQAYCNAGKFKEALIVFNRIFDRGWVDE-HVFTILMVSFSKWGEVDKAFELVEKMEGLN 208
            +++A C A +  EA I+FN +  +G       +  ++  + K GE+D+    + +M    
Sbjct: 620  LIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDE 679

Query: 209  MNPNEKTLCSLIHGFAKESRVDKALQLFEKMQILAFNPDLPLYSVLIEGLCKKKELDKAL 388
             NP+  T  SLIHG     R  +A+  + +M+     P+   +  LI+GLCK     +AL
Sbjct: 680  KNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEAL 739

Query: 389  QLYTQMKSTGIYP 427
              + +M+   + P
Sbjct: 740  VYFREMEEKEMEP 752