BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022207
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II tra...   100   1e-19
ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II tra...   100   1e-19
ref|XP_002519303.1| conserved hypothetical protein [Ricinus comm...   100   1e-19
ref|NP_001235648.1| uncharacterized protein LOC100306480 [Glycin...    98   8e-19
gb|AFK42947.1| unknown [Lotus japonicus]                               96   3e-18

>ref|XP_004168404.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           21-like [Cucumis sativus]
          Length = 138

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/61 (83%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
 Frame = +2

Query: 263 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPPANS-SESATDIAEQPKLM 439
           MDIISQLQEQVNTIA+LAFNTFGTLQRDAPPVRLSPNYPEPP+   +E    IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 440 S 442
           S
Sbjct: 61  S 61


>ref|XP_004149640.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           21-like [Cucumis sativus]
          Length = 138

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/61 (83%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
 Frame = +2

Query: 263 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPPANS-SESATDIAEQPKLM 439
           MDIISQLQEQVNTIA+LAFNTFGTLQRDAPPVRLSPNYPEPP+   +E    IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 440 S 442
           S
Sbjct: 61  S 61


>ref|XP_002519303.1| conserved hypothetical protein [Ricinus communis]
           gi|223541618|gb|EEF43167.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 135

 Score =  100 bits (249), Expect = 1e-19
 Identities = 52/60 (86%), Positives = 54/60 (90%)
 Frame = +2

Query: 263 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPPANSSESATDIAEQPKLMS 442
           MDIISQLQEQV+TIASLAFNT GTLQRDAPPVRLSPNYPEPPA  S  A DIA+QPKLMS
Sbjct: 1   MDIISQLQEQVDTIASLAFNTIGTLQRDAPPVRLSPNYPEPPA--SNPAEDIADQPKLMS 58


>ref|NP_001235648.1| uncharacterized protein LOC100306480 [Glycine max]
           gi|255628677|gb|ACU14683.1| unknown [Glycine max]
          Length = 139

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 47/60 (78%), Positives = 53/60 (88%)
 Frame = +2

Query: 263 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPPANSSESATDIAEQPKLMS 442
           MDIISQLQEQVN IA LAFNT GTLQRDAPP RLSPNYPEPPA+++E  ++ +EQPKLMS
Sbjct: 1   MDIISQLQEQVNLIAHLAFNTVGTLQRDAPPNRLSPNYPEPPAHATEDGSNFSEQPKLMS 60


>gb|AFK42947.1| unknown [Lotus japonicus]
          Length = 139

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 46/60 (76%), Positives = 50/60 (83%)
 Frame = +2

Query: 263 MDIISQLQEQVNTIASLAFNTFGTLQRDAPPVRLSPNYPEPPANSSESATDIAEQPKLMS 442
           MDIISQLQEQVN IA+LAFNT GTLQRDAPP R+SPNYPEPPA  +E     +EQPKLMS
Sbjct: 1   MDIISQLQEQVNLIANLAFNTIGTLQRDAPPNRISPNYPEPPAQPTEDGATFSEQPKLMS 60