BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022088
         (1119 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-...   232   1e-58
ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinu...   225   2e-56
ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 ...   217   4e-54
ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|2...   213   7e-53
ref|XP_004146280.1| PREDICTED: ATP-dependent RNA helicase Dhx29-...   206   1e-50

>ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-like [Glycine max]
          Length = 1528

 Score =  232 bits (591), Expect = 1e-58
 Identities = 118/187 (63%), Positives = 146/187 (78%)
 Frame = +3

Query: 552  DVELNSLFSEDASFNENLSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAAL 731
            D+EL  LF EDAS +E L P+++K QK+ K+ +LS K NL+K+DGIWKKGD  KIPKA L
Sbjct: 334  DIELGGLFLEDASPSEILPPDILKVQKQEKIRRLSEK-NLDKLDGIWKKGDPQKIPKAVL 392

Query: 732  QQLCQRSGWGAPKFTKLPATGERFSYSASIVRTASGRGKSRKAGGLVTLQLPDINETFDS 911
             QLCQ+SGW APKF K+   G+ FSY+ SI+R ASGRGK+RKAGGLVTLQLPD NET +S
Sbjct: 393  HQLCQKSGWEAPKFDKILGRGKIFSYTVSILRKASGRGKNRKAGGLVTLQLPDQNETVES 452

Query: 912  AEDAQNIVAAFALYRLFTEYPVDQLITEPYSSYVVKLMEGESPTRIEDSEETRRTSFVDS 1091
            AEDAQN VAA+ALY+LF + PV   ITEPY+  ++K MEGES T +EDSE+  R+ FVDS
Sbjct: 453  AEDAQNKVAAYALYKLFPDIPVHLPITEPYTLLIMKWMEGESSTNLEDSEKNHRSGFVDS 512

Query: 1092 LLSGSDS 1112
            LL+ + S
Sbjct: 513  LLNDNSS 519



 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 51/110 (46%), Positives = 62/110 (56%)
 Frame = +1

Query: 49  DEDTLDVRQPSQADWIRQYMXXXXXXXXXXXTLATDVSGASLEEVSDPSARAESIAKEYH 228
           ++DTLD R  SQADWIRQY+                  G S +         + IAKEY 
Sbjct: 153 NDDTLDSRLTSQADWIRQYVEQQEEDESESWEDDIFFDGRSAKHKPCEPRSYDVIAKEYL 212

Query: 229 IARLEAMNAKERGDKKIQEISGNKIRQLKQEMSNLGLSDDILTPGLEKEY 378
            ARLEA  AKE+ DK  QE +G+ IR+LKQE+S LGLSDD L   LE E+
Sbjct: 213 AARLEATKAKEKRDKNRQEQAGHIIRKLKQELSALGLSDDSL--ALEHEH 260


>ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1509

 Score =  225 bits (573), Expect = 2e-56
 Identities = 110/187 (58%), Positives = 145/187 (77%)
 Frame = +3

Query: 552  DVELNSLFSEDASFNENLSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAAL 731
            D+EL   F EDA+ NE L PEV++ QKK K+ +LSS+ NLEK+DGIWKKGD  KIPKA L
Sbjct: 356  DMELGGFFMEDATSNEALPPEVLELQKKEKMKKLSSEKNLEKLDGIWKKGDPKKIPKAVL 415

Query: 732  QQLCQRSGWGAPKFTKLPATGERFSYSASIVRTASGRGKSRKAGGLVTLQLPDINETFDS 911
             QLCQ+SGW APKF K+    + FSYS SI+R ASGRGKSRKAGGL+TLQLPD +ET++S
Sbjct: 416  HQLCQKSGWEAPKFKKVHERRKGFSYSVSILRKASGRGKSRKAGGLITLQLPDQDETYES 475

Query: 912  AEDAQNIVAAFALYRLFTEYPVDQLITEPYSSYVVKLMEGESPTRIEDSEETRRTSFVDS 1091
            AEDAQN +AAFAL++LF + PV  ++++PY S +++  EGES +++E++ + RR  FVD 
Sbjct: 476  AEDAQNRIAAFALHQLFPDLPVHLIVSDPYDSLILQWKEGESSSKVENTVDDRRAGFVDW 535

Query: 1092 LLSGSDS 1112
            LL+  +S
Sbjct: 536  LLNADES 542



 Score = 91.7 bits (226), Expect = 3e-16
 Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 4/132 (3%)
 Frame = +1

Query: 1   DERKVAEVSYKIKARVDEDT---LDVRQPS-QADWIRQYMXXXXXXXXXXXTLATDVSGA 168
           ++ +V     +IK R D+D      +RQPS QADWIRQYM                V G+
Sbjct: 151 EDVQVQAAFVRIKGRRDDDDDNDTSLRQPSSQADWIRQYMEQQEEEESETWEDYA-VDGS 209

Query: 169 SLEEVSDPSARAESIAKEYHIARLEAMNAKERGDKKIQEISGNKIRQLKQEMSNLGLSDD 348
             ++V  P +  ++IAKEY+ ARLEA+ AKE+GDK+ QE SG+ IR+LKQE+S+LGLSDD
Sbjct: 210 FTDKVPVPRSY-DAIAKEYYAARLEAVKAKEKGDKRSQEQSGHIIRKLKQELSSLGLSDD 268

Query: 349 ILTPGLEKEYAS 384
           +L      E+ S
Sbjct: 269 VLAQEFVHEHTS 280


>ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera]
            gi|297739540|emb|CBI29722.3| unnamed protein product
            [Vitis vinifera]
          Length = 1458

 Score =  217 bits (553), Expect = 4e-54
 Identities = 112/187 (59%), Positives = 138/187 (73%)
 Frame = +3

Query: 552  DVELNSLFSEDASFNENLSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAAL 731
            DVEL++ F EDA  +E L  EV+K Q K K+ +LSS  NLEK++GIWKKGD  KIPKA L
Sbjct: 355  DVELSNFF-EDAPSSEVLPHEVLKLQNKEKMKELSSGKNLEKLEGIWKKGDPQKIPKAVL 413

Query: 732  QQLCQRSGWGAPKFTKLPATGERFSYSASIVRTASGRGKSRKAGGLVTLQLPDINETFDS 911
             QLCQRSGW APK  K+      F Y+ S++R ++GRGKSRKAGGL TL+LPD  E F+S
Sbjct: 414  HQLCQRSGWEAPKLNKVLGKENGFCYAVSVLRKSTGRGKSRKAGGLTTLELPDQLEAFES 473

Query: 912  AEDAQNIVAAFALYRLFTEYPVDQLITEPYSSYVVKLMEGESPTRIEDSEETRRTSFVDS 1091
            AEDAQN VAA+ALY+LF + P+   ITEPY+S+V++  EGES  RIEDSEE RR  FV+S
Sbjct: 474  AEDAQNAVAAYALYQLFPDLPIHLAITEPYASFVIQWKEGESSIRIEDSEEDRRAGFVNS 533

Query: 1092 LLSGSDS 1112
            +L   DS
Sbjct: 534  ILDAGDS 540



 Score =  108 bits (271), Expect = 2e-21
 Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
 Frame = +1

Query: 1   DERKVAEVSYKIKARVDEDTLDVRQPSQADWIRQYMXXXXXXXXXXXTLATD-VSGASLE 177
           ++ +V+ +S +IK R D+D++D RQ SQADWIRQY+           T   D V   S +
Sbjct: 156 EDDEVSGISIRIKGRRDDDSVDSRQQSQADWIRQYVAQQEEDESK--TWEDDAVDDYSTK 213

Query: 178 EVSDPSARAESIAKEYHIARLEAMNAKERGDKKIQEISGNKIRQLKQEMSNLGLSDDILT 357
           +V++P +  E+IAKEYH ARLEA++AKE+GDKK QE +G+ IR+LKQE+S LGLSD+ L 
Sbjct: 214 KVAEPRSY-ETIAKEYHAARLEALSAKEKGDKKGQEQAGHIIRKLKQELSALGLSDNSLE 272

Query: 358 PGLEKEYAS 384
            G   E+AS
Sbjct: 273 SGFRYEHAS 281


>ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|222838999|gb|EEE77350.1|
            predicted protein [Populus trichocarpa]
          Length = 870

 Score =  213 bits (542), Expect = 7e-53
 Identities = 107/187 (57%), Positives = 137/187 (73%)
 Frame = +3

Query: 552  DVELNSLFSEDASFNENLSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAAL 731
            DVE+   F +DAS N+ L P +++ QK+ K+ +L S+ NLEK++GIWKKGD  KIPKA L
Sbjct: 349  DVEIGDFFIDDASSNDALPPGILELQKREKMRELCSEKNLEKLEGIWKKGDPQKIPKAVL 408

Query: 732  QQLCQRSGWGAPKFTKLPATGERFSYSASIVRTASGRGKSRKAGGLVTLQLPDINETFDS 911
             QLCQ+SGW APKF K+      FSY+ SI+R ASGRGKSRKAGGL++LQLPD ++TF+S
Sbjct: 409  HQLCQKSGWEAPKFNKVLERELGFSYAVSILRKASGRGKSRKAGGLISLQLPDQDDTFES 468

Query: 912  AEDAQNIVAAFALYRLFTEYPVDQLITEPYSSYVVKLMEGESPTRIEDSEETRRTSFVDS 1091
            AEDAQN VAAFAL++LF + P+   I  PYSS V++  +GE+  R+EDS E RR  FVD 
Sbjct: 469  AEDAQNRVAAFALHQLFPDLPIHLAIINPYSSLVLQWKQGETSKRVEDSVEDRRAGFVDL 528

Query: 1092 LLSGSDS 1112
            LL    S
Sbjct: 529  LLKADGS 535



 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 61/133 (45%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
 Frame = +1

Query: 4   ERKVAEVSYKIKARVDED-----TLDVRQPSQADWIRQYMXXXXXXXXXXXTLATDVSGA 168
           E +   V  + KAR DE+      LD RQPSQADWIRQY+               +    
Sbjct: 161 EEEEQRVLVRTKARWDEEDGDGNVLDFRQPSQADWIRQYVEQQE-----------EEESK 209

Query: 169 SLEEVSDPSARA-ESIAKEYHIARLEAMNAKERGDKKIQEISGNKIRQLKQEMSNLGLSD 345
           + E+ SDP  R  + IAKEYH  RLEA  AKE+GDKK QE +G+ IR+LKQEMS LGLS 
Sbjct: 210 TWEDDSDPQPRTYDVIAKEYHAVRLEATKAKEKGDKKSQEQAGHAIRKLKQEMSALGLSL 269

Query: 346 DILTPGLEKEYAS 384
           D+L      ++ S
Sbjct: 270 DLLEQDFGHQHVS 282


>ref|XP_004146280.1| PREDICTED: ATP-dependent RNA helicase Dhx29-like [Cucumis sativus]
          Length = 1642

 Score =  206 bits (523), Expect = 1e-50
 Identities = 102/186 (54%), Positives = 135/186 (72%)
 Frame = +3

Query: 552  DVELNSLFSEDASFNENLSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAAL 731
            DVE+ + F ED   N +++ E++K +KK K+ +LSS  N EK+DGIWKKGD+ KIPKA L
Sbjct: 383  DVEIGNFFLEDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKKGDTLKIPKAVL 442

Query: 732  QQLCQRSGWGAPKFTKLPATGERFSYSASIVRTASGRGKSRKAGGLVTLQLPDINETFDS 911
             QLCQ+ GW APKF K+      F Y+ S++R ASGRGK+RKAGGL+TLQ P+ +E F+S
Sbjct: 443  HQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITLQFPNEDEIFES 502

Query: 912  AEDAQNIVAAFALYRLFTEYPVDQLITEPYSSYVVKLMEGESPTRIEDSEETRRTSFVDS 1091
            AEDAQN VAAFAL  LF + PV   + EPY+S V++   GES ++++D E+ RR SFVDS
Sbjct: 503  AEDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDS 562

Query: 1092 LLSGSD 1109
            LL  S+
Sbjct: 563  LLDASN 568



 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 48/123 (39%), Positives = 66/123 (53%)
 Frame = +1

Query: 1   DERKVAEVSYKIKARVDEDTLDVRQPSQADWIRQYMXXXXXXXXXXXTLATDVSGASLEE 180
           DE    +V   +    D+D LD  Q SQA+WI+QY+                  G+S + 
Sbjct: 162 DEDGNKDVPIILSRGKDDDKLDRFQSSQAEWIKQYVEQQEEDDYGIWEDNMADEGSSKK- 220

Query: 181 VSDPSARAESIAKEYHIARLEAMNAKERGDKKIQEISGNKIRQLKQEMSNLGLSDDILTP 360
            +  +   + IA+EY+ ARL+A  AKE GDKK QE +GN IR+LKQE+   GLS D+L  
Sbjct: 221 -ASQARSYDVIAEEYYAARLDAAKAKEEGDKKRQETAGNIIRKLKQELLAQGLSVDMLAS 279

Query: 361 GLE 369
             E
Sbjct: 280 EFE 282