BLASTX nr result

ID: Coptis21_contig00021616 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021616
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331255.1| predicted protein [Populus trichocarpa] gi|2...   181   4e-44
ref|XP_002525926.1| conserved hypothetical protein [Ricinus comm...   178   5e-43
emb|CBI16929.3| unnamed protein product [Vitis vinifera]              178   5e-43
ref|XP_003530454.1| PREDICTED: uncharacterized protein LOC100776...   174   9e-42
gb|ACJ85269.1| unknown [Medicago truncatula]                          163   2e-38

>ref|XP_002331255.1| predicted protein [Populus trichocarpa] gi|222873680|gb|EEF10811.1|
           predicted protein [Populus trichocarpa]
          Length = 247

 Score =  181 bits (460), Expect = 4e-44
 Identities = 87/133 (65%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
 Frame = +2

Query: 14  VPWF-LIFSLSHLFIDLSEAKHGKQLPSAIVVGTVYCDTCFQQDFSRPNHFISGASVAVK 190
           +PWF +IF L   F + SEA HGK+LPSA+VVGTVYCDTCFQ+ FSR +HFISGA VAV+
Sbjct: 1   MPWFFIIFLLGFTFNNPSEASHGKKLPSAVVVGTVYCDTCFQEYFSRNSHFISGAHVAVE 60

Query: 191 CGSKNSKTNFNKEVKTNEHGVFEVHLPTAVSKHLNRIKGCSVKLIKSSEPFCAVASSATT 370
           C  + S+ +F +E KT+EHG F+VHLP +VSKH+ +IK CSV+L+ SSEP+CAVAS+AT+
Sbjct: 61  CKDEKSRPSFREEAKTDEHGEFKVHLPFSVSKHVKKIKRCSVELLSSSEPYCAVASTATS 120

Query: 371 SSLHLKGRKEGTH 409
           SSL LK RKEGTH
Sbjct: 121 SSLRLKSRKEGTH 133


>ref|XP_002525926.1| conserved hypothetical protein [Ricinus communis]
           gi|223534755|gb|EEF36446.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 383

 Score =  178 bits (451), Expect = 5e-43
 Identities = 87/133 (65%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
 Frame = +2

Query: 14  VPWF-LIFSLSHLFIDLSEAKHGKQLPSAIVVGTVYCDTCFQQDFSRPNHFISGASVAVK 190
           +PWF +IF L   F  LSEA H K+LPSA+VVGTVYCDTCF +DFS+ +HFISGA+VAV+
Sbjct: 1   MPWFFIIFFLCSTFNHLSEASHNKKLPSAVVVGTVYCDTCFHEDFSKNSHFISGATVAVE 60

Query: 191 CGSKNSKTNFNKEVKTNEHGVFEVHLPTAVSKHLNRIKGCSVKLIKSSEPFCAVASSATT 370
           C  +NS  +F++EVKT+EHG F VHLP +V KH+ RIK CSVKL+ SSEP+CAVAS+AT+
Sbjct: 61  CKDENS--SFHQEVKTDEHGEFRVHLPFSVGKHVKRIKKCSVKLLSSSEPYCAVASTATS 118

Query: 371 SSLHLKGRKEGTH 409
           SSL LK RK+G H
Sbjct: 119 SSLRLKSRKQGLH 131


>emb|CBI16929.3| unnamed protein product [Vitis vinifera]
          Length = 335

 Score =  178 bits (451), Expect = 5e-43
 Identities = 87/135 (64%), Positives = 108/135 (80%), Gaps = 5/135 (3%)
 Frame = +2

Query: 20  WF-LIFSLSHLFIDLSEAKHGKQLPS----AIVVGTVYCDTCFQQDFSRPNHFISGASVA 184
           WF +IF L   FID S A HGK++PS    A+VVGTV+CDTCFQ+DFS+ +HFISGASV 
Sbjct: 3   WFTMIFILCFTFIDPSVADHGKKVPSSSPSAVVVGTVFCDTCFQEDFSKTSHFISGASVV 62

Query: 185 VKCGSKNSKTNFNKEVKTNEHGVFEVHLPTAVSKHLNRIKGCSVKLIKSSEPFCAVASSA 364
           V+CG  + K +F KE KTNEHGVF+VHLP +VSKH+ +IK CSV+LI SSEP+C+VAS+A
Sbjct: 63  VECGDGSLKPSFQKEAKTNEHGVFKVHLPISVSKHVRKIKRCSVRLISSSEPYCSVASTA 122

Query: 365 TTSSLHLKGRKEGTH 409
           T+SSL LK RK+G H
Sbjct: 123 TSSSLRLKSRKQGIH 137


>ref|XP_003530454.1| PREDICTED: uncharacterized protein LOC100776610 [Glycine max]
          Length = 345

 Score =  174 bits (440), Expect = 9e-42
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 8/138 (5%)
 Frame = +2

Query: 20  WFLIFSLSHLFIDL------SEAKHGKQLPSAIVVGTVYCDTCFQQDFSRPNHFISGASV 181
           WFL+     LF+ L      SE  H K+LPSA+VVGTVYCDTCFQQDFS  NHFISGASV
Sbjct: 3   WFLVI----LFLSLTFGTTHSETSHHKKLPSAVVVGTVYCDTCFQQDFSMGNHFISGASV 58

Query: 182 AVKC--GSKNSKTNFNKEVKTNEHGVFEVHLPTAVSKHLNRIKGCSVKLIKSSEPFCAVA 355
           AV+C  G   SK  F KEVKT++HG F+V LP +VSKH+ RIKGC+VKLI SSEP+CAVA
Sbjct: 59  AVECKDGYGRSKPRFRKEVKTDDHGEFKVQLPFSVSKHVKRIKGCTVKLINSSEPYCAVA 118

Query: 356 SSATTSSLHLKGRKEGTH 409
           S+AT+SSL LK RK+G H
Sbjct: 119 SAATSSSLRLKSRKQGQH 136


>gb|ACJ85269.1| unknown [Medicago truncatula]
          Length = 261

 Score =  163 bits (412), Expect = 2e-38
 Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 7/137 (5%)
 Frame = +2

Query: 20  WFL-IFSLSHLFIDLSEAKHG----KQLPSAIVVGTVYCDTCFQQDFSRPNHFISGASVA 184
           WFL I  L   F   SEA H     K+  SA+VVGTVYCDTCFQQDFS  NHFISGASV 
Sbjct: 3   WFLVILFLIVTFGTFSEASHHHHHHKKPLSAVVVGTVYCDTCFQQDFSMGNHFISGASVE 62

Query: 185 VKC--GSKNSKTNFNKEVKTNEHGVFEVHLPTAVSKHLNRIKGCSVKLIKSSEPFCAVAS 358
           V+C  G++ SK  F K+VKTNEHG F++ LP +VSKH+ RIKGC VKL+ S+EPFC++AS
Sbjct: 63  VECKDGNEISKPRFKKQVKTNEHGEFKIQLPFSVSKHVKRIKGCVVKLVSSNEPFCSIAS 122

Query: 359 SATTSSLHLKGRKEGTH 409
           +A++SSLHLK RK+G H
Sbjct: 123 AASSSSLHLKSRKQGLH 139


Top