BLASTX nr result
ID: Coptis21_contig00021462
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00021462
(608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera] 115 6e-38
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 116 8e-38
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 116 2e-36
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera] 105 6e-36
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 108 1e-35
>emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]
Length = 1302
Score = 115 bits (287), Expect(2) = 6e-38
Identities = 54/109 (49%), Positives = 72/109 (66%)
Frame = +1
Query: 280 KDVRHVPDIRLSLISAGKLDDDGFLNSFGNGVWKLSRGSIVAAKGKKTCSLYKTQASLCK 459
K+V+H+PDIR++LIS GKLDD+GF N+F + WKL+RGS+ AKG K+ SLY QA +
Sbjct: 215 KNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSMXIAKGNKSSSLYLMQARVID 274
Query: 460 TEVNXXXXXXXXXLWHKRLCHMGEKGMEVLAKQKALPNIKGTYLNRCTH 606
+ +N LWH RL HM EKG+ +LAK+ L +K L RC H
Sbjct: 275 SSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSXMKKGSLKRCAH 323
Score = 68.2 bits (165), Expect(2) = 6e-38
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Frame = +3
Query: 24 KRNGNTGRDTTALVDDDLVGIVSD----YGK*CVSTSCQDTEWVIDTGASYHVTPH---- 179
K+N N G D D + SD Y V+ +CQ+T WVID+GAS H TP
Sbjct: 122 KKNDNGGED------DQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFF 175
Query: 180 -----SEFGEVKMGNIGVSKIVGIGDVNVETNVGYTLT 278
+FG V+MGN G +K +G+GDV +ET+ G LT
Sbjct: 176 TSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLT 213
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 116 bits (290), Expect(2) = 8e-38
Identities = 54/109 (49%), Positives = 73/109 (66%)
Frame = +1
Query: 280 KDVRHVPDIRLSLISAGKLDDDGFLNSFGNGVWKLSRGSIVAAKGKKTCSLYKTQASLCK 459
K+V+H+PDIR++LIS GKLDD+GF N+F + WKL+RGS+V AKG K+ SLY QA +
Sbjct: 328 KNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSSLYLMQARVID 387
Query: 460 TEVNXXXXXXXXXLWHKRLCHMGEKGMEVLAKQKALPNIKGTYLNRCTH 606
+ +N LWH +L HM EKG+ +LAK+ L +K L RC H
Sbjct: 388 SSINAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLXGMKKGSLKRCAH 436
Score = 66.6 bits (161), Expect(2) = 8e-38
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Frame = +3
Query: 24 KRNGNTGRDTTALVDDDLVGIVSD----YGK*CVSTSCQDTEWVIDTGASYHVTPHSEF- 188
K+N N G D D + +SD Y V+ +CQ++ WVID GAS H TP +F
Sbjct: 235 KKNDNGGED------DQVATTISDFLIVYDSDVVNFACQESXWVIDXGASIHATPQKDFF 288
Query: 189 --------GEVKMGNIGVSKIVGIGDVNVETNVGYTLT 278
G V+MGN G +K +G+GDV +ET+ G LT
Sbjct: 289 TSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSNGTMLT 326
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 116 bits (290), Expect(2) = 2e-36
Identities = 54/109 (49%), Positives = 73/109 (66%)
Frame = +1
Query: 280 KDVRHVPDIRLSLISAGKLDDDGFLNSFGNGVWKLSRGSIVAAKGKKTCSLYKTQASLCK 459
K+V+H PDIRL+LIS GKLDDDGF FG+G WK+++GS+V A+G K+ +LY Q+S+
Sbjct: 346 KNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQSSVSD 405
Query: 460 TEVNXXXXXXXXXLWHKRLCHMGEKGMEVLAKQKALPNIKGTYLNRCTH 606
VN LWHKRL HM KG++ LAK+ L +K L++C H
Sbjct: 406 DSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKLDKCVH 454
Score = 62.4 bits (150), Expect(2) = 2e-36
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = +3
Query: 27 RNGNTGRDTTALVDDDLVGIVSDYGK*CVSTSCQDTEWVIDTGASYHVTPHSE------- 185
++G+TG + D LV + ++ +C +T W++D+GA+YHVTP E
Sbjct: 256 KDGDTGNQVATVRADLLVACDDNV----INVACHETTWIVDSGAAYHVTPRKEFFTSYTP 311
Query: 186 --FGEVKMGNIGVSKIVGIGDVNVETNVGYTL 275
FGE++MGN G K+ G G V +ET+ G L
Sbjct: 312 GDFGELRMGNDGQVKVTGTGTVCLETSNGTKL 343
>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
Length = 1017
Score = 105 bits (263), Expect(2) = 6e-36
Identities = 49/109 (44%), Positives = 68/109 (62%)
Frame = +1
Query: 280 KDVRHVPDIRLSLISAGKLDDDGFLNSFGNGVWKLSRGSIVAAKGKKTCSLYKTQASLCK 459
K+V+H+PDIR++LIS KLDD+G N+F + WKL+RGS+V K K+ SLY Q +
Sbjct: 102 KNVKHIPDIRMNLISTRKLDDEGLCNTFRDSQWKLTRGSMVITKENKSSSLYLMQVRVID 161
Query: 460 TEVNXXXXXXXXXLWHKRLCHMGEKGMEVLAKQKALPNIKGTYLNRCTH 606
+ +N LWH RL HM EKG+ ++AK+ L +K L RC H
Sbjct: 162 SSINAVDDDSTFKLWHNRLSHMSEKGLMIMAKKNLLSGMKKGSLKRCAH 210
Score = 70.9 bits (172), Expect(2) = 6e-36
Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 13/98 (13%)
Frame = +3
Query: 24 KRNGNTGRDTTALVDDDLVGIVSD----YGK*CVSTSCQDTEWVIDTGASYHVTPH---- 179
K+N N G D D + SD Y V+ +CQ+T WVID+GAS H TP
Sbjct: 9 KKNDNGGED------DQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFF 62
Query: 180 -----SEFGEVKMGNIGVSKIVGIGDVNVETNVGYTLT 278
S+FG V+MGN G++K +G+GDV +ET+ G LT
Sbjct: 63 TSYTFSDFGSVRMGNDGLAKAIGMGDVRLETSNGTMLT 100
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 108 bits (270), Expect(2) = 1e-35
Identities = 50/109 (45%), Positives = 72/109 (66%)
Frame = +1
Query: 280 KDVRHVPDIRLSLISAGKLDDDGFLNSFGNGVWKLSRGSIVAAKGKKTCSLYKTQASLCK 459
KDVRHVPD+R++LIS LD DG+ + F N W+L++GS+V AKG +LY+T A +C+
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQ 410
Query: 460 TEVNXXXXXXXXXLWHKRLCHMGEKGMEVLAKQKALPNIKGTYLNRCTH 606
E+N LWHKR+ HM EKG+++LAK+ + KGT + C +
Sbjct: 411 GELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDY 459
Score = 67.0 bits (162), Expect(2) = 1e-35
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 12/94 (12%)
Frame = +3
Query: 30 NGNTGRDTTALV---DDDLVGIVSDYGK*CVSTSCQDTEWVIDTGASYHVTP-------- 176
+G D TA + +D++V +++ + C+ S ++EWV+DT AS+H TP
Sbjct: 256 SGQKNDDNTAAMVQNNDNVVLFINEEEE-CMHLSGPESEWVVDTAASHHATPVRDLFCRY 314
Query: 177 -HSEFGEVKMGNIGVSKIVGIGDVNVETNVGYTL 275
+FG VKMGN SKI GIGD+ ++TNVG TL
Sbjct: 315 VAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTL 348