BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021423
         (714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28722.3| unnamed protein product [Vitis vinifera]              312   5e-83
ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containi...   312   5e-83
ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...   283   2e-74
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...   282   5e-74
ref|NP_171809.1| pentatricopeptide repeat-containing protein [Ar...   279   4e-73

>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  312 bits (799), Expect = 5e-83
 Identities = 154/218 (70%), Positives = 187/218 (85%)
 Frame = +2

Query: 32   IPASTVLRRMVKTEKYPPVTPWSAIVAHMSRTASGAYLAAELILEIGYLFQDNRVDPRKK 211
            +PASTVLR++V+ E++PPV+ WSAI+AHMS+TASGAYLAAELILEIGYLFQD RVDPRKK
Sbjct: 755  VPASTVLRKLVEMEEFPPVSAWSAILAHMSQTASGAYLAAELILEIGYLFQDGRVDPRKK 814

Query: 212  TNRPLLSMKPNTTVFNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEIN 391
            +NRPLL+MKPNTT FN+ALAGCLLFGTTRKAE+LL+MMPRVG+K D NLLI MAHIYE N
Sbjct: 815  SNRPLLAMKPNTTAFNIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERN 874

Query: 392  GHRDELKKLKRHIDDTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARI 571
            G R++L+KLKRHID+  NL D+Q++QFYNCLLTCHL FGDL SAS MVLEML KA++AR 
Sbjct: 875  GRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARN 934

Query: 572  SLASATLTLEAVGTRKFSSPTVNSRQTRGLQKSDVLKH 685
            SL++ATL  EAVG+   S+    S ++   +KSD L++
Sbjct: 935  SLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLEN 972


>ref|XP_003632339.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Vitis vinifera]
          Length = 784

 Score =  312 bits (799), Expect = 5e-83
 Identities = 154/218 (70%), Positives = 187/218 (85%)
 Frame = +2

Query: 32  IPASTVLRRMVKTEKYPPVTPWSAIVAHMSRTASGAYLAAELILEIGYLFQDNRVDPRKK 211
           +PASTVLR++V+ E++PPV+ WSAI+AHMS+TASGAYLAAELILEIGYLFQD RVDPRKK
Sbjct: 178 VPASTVLRKLVEMEEFPPVSAWSAILAHMSQTASGAYLAAELILEIGYLFQDGRVDPRKK 237

Query: 212 TNRPLLSMKPNTTVFNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEIN 391
           +NRPLL+MKPNTT FN+ALAGCLLFGTTRKAE+LL+MMPRVG+K D NLLI MAHIYE N
Sbjct: 238 SNRPLLAMKPNTTAFNIALAGCLLFGTTRKAEKLLDMMPRVGVKPDVNLLIIMAHIYERN 297

Query: 392 GHRDELKKLKRHIDDTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARI 571
           G R++L+KLKRHID+  NL D+Q++QFYNCLLTCHL FGDL SAS MVLEML KA++AR 
Sbjct: 298 GRREDLRKLKRHIDEAHNLSDIQFRQFYNCLLTCHLKFGDLDSASHMVLEMLRKAREARN 357

Query: 572 SLASATLTLEAVGTRKFSSPTVNSRQTRGLQKSDVLKH 685
           SL++ATL  EAVG+   S+    S ++   +KSD L++
Sbjct: 358 SLSAATLMFEAVGSGNTSTQEQVSEKSLSHRKSDGLEN 395


>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
           predicted protein [Populus trichocarpa]
          Length = 750

 Score =  283 bits (725), Expect = 2e-74
 Identities = 137/187 (73%), Positives = 162/187 (86%)
 Frame = +2

Query: 32  IPASTVLRRMVKTEKYPPVTPWSAIVAHMSRTASGAYLAAELILEIGYLFQDNRVDPRKK 211
           +PASTVLR++++ E+YPPVT WSAI+AHMS TA GAYLAAELILEIGYLFQD RVDPRKK
Sbjct: 147 VPASTVLRKLIQMEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGRVDPRKK 206

Query: 212 TNRPLLSMKPNTTVFNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEIN 391
            N PL++MKPNT   N+AL GCLLFGTTRKAEQLL+MMPR+GI+AD+NLLI MAHIYE N
Sbjct: 207 INAPLIAMKPNTIAMNIALTGCLLFGTTRKAEQLLDMMPRIGIRADTNLLIIMAHIYERN 266

Query: 392 GHRDELKKLKRHIDDTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARI 571
           G R+EL+KL+RHIDD+ +L D Q++QFYNCLLTCHL FGDL +AS MVL ML KA++AR 
Sbjct: 267 GRREELRKLQRHIDDSQSLTDTQFRQFYNCLLTCHLKFGDLDAASNMVLIMLRKAREARN 326

Query: 572 SLASATL 592
           S A+A L
Sbjct: 327 SFATAAL 333


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score =  282 bits (721), Expect = 5e-74
 Identities = 145/232 (62%), Positives = 179/232 (77%), Gaps = 8/232 (3%)
 Frame = +2

Query: 38  ASTVLRRMVKTEKYPPVTPWSAIVAHMSRTASGAYLAAELILEIGYLFQDNRVDPRKKTN 217
           ASTVLR++++ E+YPPVT WSAI+AHMS TA GAYLAAELILEIGYLFQD +VDPRKK N
Sbjct: 186 ASTVLRKLIEMEQYPPVTAWSAILAHMSLTAPGAYLAAELILEIGYLFQDGKVDPRKKCN 245

Query: 218 RPLLSMKPNTTVFNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEINGH 397
             L++MKPNTT  N+ALAGCL+FGTTRKAEQLL+++PRVGIK ++ LLITMAHIYE NG 
Sbjct: 246 ATLIAMKPNTTSVNIALAGCLVFGTTRKAEQLLDLIPRVGIKVNATLLITMAHIYERNGR 305

Query: 398 RDELKKLKRHIDDTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARISL 577
           R EL KL+RHID+  ++ D+QY+QFYNCLL+CHL FGDL SAS MVL+ML KAK+AR SL
Sbjct: 306 RQELMKLQRHIDEAHSISDIQYRQFYNCLLSCHLKFGDLDSASDMVLKMLWKAKEARNSL 365

Query: 578 ASATLTLEA---VGTRKFSSPTVNSRQTRGLQKS-----DVLKHPIFVESSD 709
           A+A    +A       + S  +VN R+  GL KS      ++ H  F++  D
Sbjct: 366 AAAKFVYQADSKSSHEQISPDSVNHREPDGLNKSRPNRTPMISHGEFLKDRD 417


>ref|NP_171809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200246|sp|Q9SA60.1|PPR6_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g03100, mitochondrial; Flags: Precursor
           gi|4587568|gb|AAD25799.1|AC006550_7 Contains PF|00637
           Clathrin 7-fold repeat. EST gb|AA721862 comes from this
           gene [Arabidopsis thaliana] gi|44917465|gb|AAS49057.1|
           At1g03100 [Arabidopsis thaliana]
           gi|332189408|gb|AEE27529.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 793

 Score =  279 bits (714), Expect = 4e-73
 Identities = 131/205 (63%), Positives = 168/205 (81%)
 Frame = +2

Query: 32  IPASTVLRRMVKTEKYPPVTPWSAIVAHMSRTASGAYLAAELILEIGYLFQDNRVDPRKK 211
           +PAST+LR++V+TE+YP V+ WSA++AHMS   SG+YL+AEL+LEIGYLF +NRVDPRKK
Sbjct: 187 VPASTILRKLVETEEYPHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKK 246

Query: 212 TNRPLLSMKPNTTVFNLALAGCLLFGTTRKAEQLLEMMPRVGIKADSNLLITMAHIYEIN 391
           +N PLL+MKPNT V N+ALAGCLLFGTTRKAEQLL+M+P++G+KAD+NLL+ MAHIYE N
Sbjct: 247 SNAPLLAMKPNTQVLNVALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERN 306

Query: 392 GHRDELKKLKRHIDDTCNLGDLQYQQFYNCLLTCHLNFGDLSSASQMVLEMLSKAKKARI 571
           G R+EL+KL+RHID+ CNL + Q+ QFYNCLL CHL FGDL SAS+MVLEML + K AR 
Sbjct: 307 GRREELRKLQRHIDEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARN 366

Query: 572 SLASATLTLEAVGTRKFSSPTVNSR 646
           SL +A L  +     +  +  V+ +
Sbjct: 367 SLGAAILEFDTADDGRLYTKRVSGK 391