BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021323
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...    92   3e-17
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]    92   6e-17
emb|CBI28010.3| unnamed protein product [Vitis vinifera]               90   2e-16
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...    90   2e-16
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...    87   1e-15

>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/98 (46%), Positives = 62/98 (63%)
 Frame = -1

Query: 307  MTSVMKIEDKEARDIAAEDVIQKYKQILYGTTEFDDSTREKEVIYNEALAIYHVTYDYAK 128
            M   M++ D +A++IAAE  I+KYK+ILYG  E + S R  E +Y EALAIY VTYD+A 
Sbjct: 955  MVDAMQL-DPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDHAM 1013

Query: 127  TSGVGKCNFVWKVAGRALCTLYAMLQDKNIYKVLHEIL 14
            +  V  C F WKVAG AL  LYA+   +  +  L  ++
Sbjct: 1014 SRSVRNCGFAWKVAGSALFKLYAIKHSERSFHCLPSVM 1051


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
 Frame = -1

Query: 277  EARDIAAEDVIQKYKQILYGTTEFDDSTREKEVIYNEALAIYHVTYDYA-KTSGVGKCNF 101
            E +D  A +VI KYKQILYG  EF++S R+ E I++EALAIYHVTY++A   + V  CNF
Sbjct: 1109 ETKDEYAAEVINKYKQILYGAAEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNF 1168

Query: 100  VWKVAGRALCTLYAM-LQDKN---IYKVLHEILN 11
             W+VAGRALC LY + L +K+   +  VL ++ N
Sbjct: 1169 PWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 1202


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 5/94 (5%)
 Frame = -1

Query: 277  EARDIAAEDVIQKYKQILYGTTEFDDSTREKEVIYNEALAIYHVTYDYA-KTSGVGKCNF 101
            E +D  A +VI KYKQILYG  EF++S R  E I++EALAIYHVTY++    + V  CNF
Sbjct: 836  ETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNF 895

Query: 100  VWKVAGRALCTLYAM-LQDKN---IYKVLHEILN 11
             W+VAGRALC LY + L +K+   +  VL ++ N
Sbjct: 896  PWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 929


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 48/94 (51%), Positives = 64/94 (68%), Gaps = 5/94 (5%)
 Frame = -1

Query: 277  EARDIAAEDVIQKYKQILYGTTEFDDSTREKEVIYNEALAIYHVTYDYA-KTSGVGKCNF 101
            E +D  A +VI KYKQILYG  EF++S R  E I++EALAIYHVTY++    + V  CNF
Sbjct: 850  ETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNF 909

Query: 100  VWKVAGRALCTLYAM-LQDKN---IYKVLHEILN 11
             W+VAGRALC LY + L +K+   +  VL ++ N
Sbjct: 910  PWRVAGRALCKLYTVKLGEKSMVCVPSVLRQVFN 943


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
 Frame = -1

Query: 307  MTSVMKIEDKEARDIAAEDVIQKYKQILYGTTEFDDSTREKEVIYNEALAIYHVTYDYAK 128
            MT  MK +    +D +A +VIQ+YKQ  YG   F+DS +  E +Y +AL +Y + YDYA 
Sbjct: 882  MTQAMKTD----KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAI 937

Query: 127  TSGVGKCNFVWKVAGRALCTLYAM--LQDKNI 38
             +GV KC FVWKVAG  LC  Y M  +Q+K++
Sbjct: 938  HAGVSKCGFVWKVAGPVLCRFYLMKKMQEKSL 969