BLASTX nr result

ID: Coptis21_contig00021313 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021313
         (742 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003525566.1| PREDICTED: uncharacterized protein LOC100814...   251   1e-64
emb|CBI31917.3| unnamed protein product [Vitis vinifera]              249   4e-64
ref|XP_003608723.1| DEAD-box ATP-dependent RNA helicase [Medicag...   234   2e-59
ref|XP_004152431.1| PREDICTED: uncharacterized protein LOC101212...   223   3e-56
ref|XP_001781419.1| predicted protein [Physcomitrella patens sub...   174   2e-41

>ref|XP_003525566.1| PREDICTED: uncharacterized protein LOC100814892 [Glycine max]
          Length = 446

 Score =  251 bits (641), Expect = 1e-64
 Identities = 113/186 (60%), Positives = 134/186 (72%)
 Frame = +3

Query: 3   KCNNPGHLAEDCLVSSGAQSYSSISRDLRALYRRCHQIGKXXXXXXXXXXXXXXXXXXXX 182
           KC  PGHLAEDC+V+ G+   SSI +DL  LYRRCHQIGK                    
Sbjct: 261 KCQRPGHLAEDCMVTDGSNRSSSIPKDLLQLYRRCHQIGKDLLAANCNVCRRSSNLATCL 320

Query: 183 XXXXNYCDSSGHLHEHIVAHPSHKQLYSYKLQRLVKCCKSTCDVTDINDLLSCHYCIDKA 362
                 CD +GHL EHI  HPSH++ YS+KL+RLVKCCKSTC VTDI DLL CHYC DKA
Sbjct: 321 DCSIVLCDGAGHLIEHIRTHPSHQKYYSHKLKRLVKCCKSTCKVTDIKDLLVCHYCFDKA 380

Query: 363 FEKFYDMYTATWKHAGISIIWNSICCEEHFSWHRMNCMSADVEGSAYVIRPHSQRDKRIQ 542
           FEKFYDMYTATWK AG++I+W SICCE+HF+WHRMNC++A+VE SAY+++P   + KR Q
Sbjct: 381 FEKFYDMYTATWKGAGLAIMWGSICCEDHFTWHRMNCLNANVEESAYILKPDGHKGKRTQ 440

Query: 543 LSDFIF 560
           LSDFIF
Sbjct: 441 LSDFIF 446


>emb|CBI31917.3| unnamed protein product [Vitis vinifera]
          Length = 448

 Score =  249 bits (636), Expect = 4e-64
 Identities = 115/203 (56%), Positives = 139/203 (68%), Gaps = 17/203 (8%)
 Frame = +3

Query: 3   KCNNPGHLAEDCLVSS-----------------GAQSYSSISRDLRALYRRCHQIGKXXX 131
           KC  PGHLA+DCLV +                 G    + ISRDL  LY+RCHQIGK   
Sbjct: 246 KCQRPGHLADDCLVMTSNSQSPCLSQTCNKVPMGQNKSTFISRDLLGLYKRCHQIGKNLT 305

Query: 132 XXXXXXXXXXXXXXXXXXXXXNYCDSSGHLHEHIVAHPSHKQLYSYKLQRLVKCCKSTCD 311
                                  CD++GHL EHI+AHPSH++++SYKL+RLVKCCKSTC+
Sbjct: 306 TAKCNLCCSSSTLATCLDCSTVICDNAGHLKEHIIAHPSHQKIFSYKLKRLVKCCKSTCE 365

Query: 312 VTDINDLLSCHYCIDKAFEKFYDMYTATWKHAGISIIWNSICCEEHFSWHRMNCMSADVE 491
           VTD+ DLL CHYC+DKAF+KFYDMYTATWK  G+SIIW SICCEEHF+WHRMNC++ADVE
Sbjct: 366 VTDLKDLLVCHYCLDKAFDKFYDMYTATWKGNGLSIIWGSICCEEHFAWHRMNCLNADVE 425

Query: 492 GSAYVIRPHSQRDKRIQLSDFIF 560
            SAY+ R H+Q++  IQLSDFIF
Sbjct: 426 DSAYIFRRHAQKNNSIQLSDFIF 448


>ref|XP_003608723.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
           gi|355509778|gb|AES90920.1| DEAD-box ATP-dependent RNA
           helicase [Medicago truncatula]
          Length = 452

 Score =  234 bits (596), Expect = 2e-59
 Identities = 111/193 (57%), Positives = 130/193 (67%), Gaps = 7/193 (3%)
 Frame = +3

Query: 3   KCNNPGHLAEDCLVSSGAQ-------SYSSISRDLRALYRRCHQIGKXXXXXXXXXXXXX 161
           KC  PGHLAEDCLV S ++         SSI +DL  LYRRCHQ+GK             
Sbjct: 260 KCQRPGHLAEDCLVKSCSEITVGRSNRSSSIPKDLLGLYRRCHQLGKDLLAANCNTCRSS 319

Query: 162 XXXXXXXXXXXNYCDSSGHLHEHIVAHPSHKQLYSYKLQRLVKCCKSTCDVTDINDLLSC 341
                        CD +GHL +HI  HPSH++ YS+KL+RLVKCCKSTC VTDI DLL C
Sbjct: 320 LNLATCIDCSIVLCDGAGHLDDHIRTHPSHQKYYSHKLKRLVKCCKSTCKVTDIKDLLVC 379

Query: 342 HYCIDKAFEKFYDMYTATWKHAGISIIWNSICCEEHFSWHRMNCMSADVEGSAYVIRPHS 521
           HYC DKAFEKFYDMYTATWK AG SII  SICCE+HF+WHRMNC++A  E SAY+++ + 
Sbjct: 380 HYCFDKAFEKFYDMYTATWKGAGFSIISGSICCEDHFTWHRMNCLNAGAEESAYIVQRNG 439

Query: 522 QRDKRIQLSDFIF 560
            + KR QLSDFIF
Sbjct: 440 HKGKRTQLSDFIF 452


>ref|XP_004152431.1| PREDICTED: uncharacterized protein LOC101212105 [Cucumis sativus]
           gi|449513293|ref|XP_004164287.1| PREDICTED:
           uncharacterized protein LOC101227135 [Cucumis sativus]
          Length = 443

 Score =  223 bits (568), Expect = 3e-56
 Identities = 104/194 (53%), Positives = 128/194 (65%), Gaps = 8/194 (4%)
 Frame = +3

Query: 3   KCNNPGHLAEDCLVSSGAQ--------SYSSISRDLRALYRRCHQIGKXXXXXXXXXXXX 158
           KC  PGHLAEDCLV +  Q        + + +  DL  LY+RC+Q+GK            
Sbjct: 250 KCQKPGHLAEDCLVKTSNQVRIAMQQMTSNPVPGDLLGLYKRCYQMGKNLSNALCNECSC 309

Query: 159 XXXXXXXXXXXXNYCDSSGHLHEHIVAHPSHKQLYSYKLQRLVKCCKSTCDVTDINDLLS 338
                        YCDS+GHL+EHI  HP+H   YS+KL+RLVKCCKSTC VT I DLL 
Sbjct: 310 SYSLATCLDCNTVYCDSAGHLNEHIHTHPTHGLYYSHKLKRLVKCCKSTCRVTQIKDLLV 369

Query: 339 CHYCIDKAFEKFYDMYTATWKHAGISIIWNSICCEEHFSWHRMNCMSADVEGSAYVIRPH 518
           CHYC DKAF+KFYDMYTA+W  AG+SII  SICCE+HF+WHRMNC +ADVE +AY+I   
Sbjct: 370 CHYCFDKAFDKFYDMYTASWNRAGLSIISGSICCEDHFAWHRMNCFNADVEDTAYIINRK 429

Query: 519 SQRDKRIQLSDFIF 560
            ++DK + +SDFIF
Sbjct: 430 PKKDKFVSISDFIF 443


>ref|XP_001781419.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162667156|gb|EDQ53793.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 489

 Score =  174 bits (440), Expect = 2e-41
 Identities = 88/200 (44%), Positives = 116/200 (58%), Gaps = 14/200 (7%)
 Frame = +3

Query: 3   KCNNPGHLAEDCLVSSG--AQSYSSISRD------------LRALYRRCHQIGKXXXXXX 140
           KC  PGHL EDC+VS G  AQS SS SR             L+ LYRRC +I        
Sbjct: 291 KCKRPGHLPEDCVVSMGIPAQS-SSDSRQYNVPPTFSAGPMLQDLYRRCKEIEGQAKASK 349

Query: 141 XXXXXXXXXXXXXXXXXXNYCDSSGHLHEHIVAHPSHKQLYSYKLQRLVKCCKSTCDVTD 320
                              +CDS GHL  H+  +PSH+++YS KL RLVKCCK  C V D
Sbjct: 350 CDKCGINFNLAYCLDCGKTFCDSQGHLSSHMQENPSHRRMYSRKLHRLVKCCKGPCPVVD 409

Query: 321 INDLLSCHYCIDKAFEKFYDMYTATWKHAGISIIWNSICCEEHFSWHRMNCMSADVEGSA 500
           + +LL+C+ C+ +AF+K+Y MY ATWK AG+ +I N+ICC+ HF+WHRMNC + DVE SA
Sbjct: 410 MRELLACNSCLSEAFDKYYSMYNATWKGAGLKLIVNAICCDAHFNWHRMNCGNVDVEDSA 469

Query: 501 YVIRPHSQRDKRIQLSDFIF 560
            ++R         Q ++F+F
Sbjct: 470 SLLRKDGSDLHGSQFNEFLF 489


Top