BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021096
         (1340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containi...   540   e-151
ref|XP_002517094.1| pentatricopeptide repeat-containing protein,...   488   e-135
ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containi...   485   e-134
dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]    484   e-134
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   484   e-134

>ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial [Vitis vinifera]
          Length = 535

 Score =  540 bits (1392), Expect = e-151
 Identities = 268/415 (64%), Positives = 328/415 (79%)
 Frame = -3

Query: 1332 VSESLVETVMKRFSHDWISAFGLFKWYQKQTGYKTSPGLYDLIVDILGKAKMFDMMWDLV 1153
            VSESLVE V+KRFS+DWI AFG FKW + QTGY+ S   Y+ +VDILGK K FD+MW+LV
Sbjct: 117  VSESLVEQVLKRFSNDWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELV 176

Query: 1152 VEMVFLGGLVSLTTISKIMRRLARAGRWVDAIITFREIERFGLIKDVVTMNVLLDSLCKE 973
             EM  LGG VSL T++K+MRRLARA RW DAI  FR +ERFG+ KD + MN L+D+L KE
Sbjct: 177  EEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKE 236

Query: 972  RGVEHAWDVFSEFKNEIPPNSHTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYT 793
              VEHA DVF EFK+ I  N HTFNVL+HG CKAR+++ A  ++ EM+  G  P VI+YT
Sbjct: 237  NSVEHANDVFVEFKDSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYT 296

Query: 792  SLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKN 613
            S++EAYCR+KDFRKV+++L+EM+ KGC PNVVTYTIVMHALGK KE   AL +YE+MK +
Sbjct: 297  SIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGS 356

Query: 612  GCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDA 433
             CVPDTSFY+SLIYI SKAGRL++A  +F++M+K G  PDV TYNTMIS AC HSQ EDA
Sbjct: 357  SCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDA 416

Query: 432  LKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNG 253
            LKLL +MEE  CKPDL TY+PLLK+CCR   MK+L  LL+ MFK DISLEVGTYSLLV+G
Sbjct: 417  LKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHG 476

Query: 252  LCKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQA 88
            LCKSG +E AC FFEEMV KG VP   T+  L++ELE+K+M + KE+++KLM+QA
Sbjct: 477  LCKSGKLEHACLFFEEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQA 531



 Score = 91.7 bits (226), Expect = 4e-16
 Identities = 63/244 (25%), Positives = 125/244 (51%)
 Frame = -3

Query: 801 TYTSLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERM 622
           +Y S+++   + K F  +  L++EM   G   ++ T T VM  L +A    DA+  +  M
Sbjct: 155 SYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRGM 214

Query: 621 KKNGCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQV 442
           ++ G   DT   N+L+    K   ++ A+ +F E  K+    +  T+N +I   C   ++
Sbjct: 215 ERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEF-KDSILLNPHTFNVLIHGWCKARKM 273

Query: 441 EDALKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLL 262
           ++ALK + EM+E    PD+ +Y  +++  CR K  + +  +L++M +K     V TY+++
Sbjct: 274 DNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTIV 333

Query: 261 VNGLCKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAES 82
           ++ L K   + +A   +E+M     VP +S Y  L+  L +    K+   + + MT+  +
Sbjct: 334 MHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQGA 393

Query: 81  LENL 70
           + ++
Sbjct: 394 IPDV 397



 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 63/280 (22%), Positives = 124/280 (44%)
 Frame = -3

Query: 909 HTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYTSLIEAYCRDKDFRKVDALLDE 730
           +++N ++    K ++ +     +EEM+R G +  + T T ++    R   ++        
Sbjct: 154 NSYNSMVDILGKLKKFDLMWELVEEMDRLGGYVSLATMTKVMRRLARASRWKDAIEAFRG 213

Query: 729 MQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKNGCVPDTSFYNSLIYICSKAGR 550
           M+  G   + +    +M AL K      A  ++   K +  +   +F N LI+   KA +
Sbjct: 214 MERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLNPHTF-NVLIHGWCKARK 272

Query: 549 LQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDALKLLQEMEERLCKPDLKTYAP 370
           +  A K   EM ++G  PDV +Y +++   C          +L EMEE+ C P++ TY  
Sbjct: 273 MDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKGCPPNVVTYTI 332

Query: 369 LLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNGLCKSGNVEQACFFFEEMVLKG 190
           ++    + K +     +   M       +   YS L+  L K+G ++ A   FE+M  +G
Sbjct: 333 VMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLKDARDVFEDMTKQG 392

Query: 189 QVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAESLENL 70
            +P   TY+ ++      + E++  K+   M ++    +L
Sbjct: 393 AIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDL 432


>ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543729|gb|EEF45257.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 549

 Score =  488 bits (1255), Expect = e-135
 Identities = 234/415 (56%), Positives = 309/415 (74%)
 Frame = -3

Query: 1329 SESLVETVMKRFSHDWISAFGLFKWYQKQTGYKTSPGLYDLIVDILGKAKMFDMMWDLVV 1150
            + +L+  ++ RF +DW+ A GLF W + QTGY   P LYDL+VDILG+ K F  MW+LV 
Sbjct: 130  TNNLISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVK 189

Query: 1149 EMVFLGGLVSLTTISKIMRRLARAGRWVDAIITFREIERFGLIKDVVTMNVLLDSLCKER 970
            EM  L G VSL T+ K+MRRLARAG + DA+  FR IE+ G+ KD+  +NVL+D+L KE 
Sbjct: 190  EMENLEGYVSLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEG 249

Query: 969  GVEHAWDVFSEFKNEIPPNSHTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYTS 790
             VEHA+  F EFK+ I  +  +FN+LLHG CKAR+L+ A+  ++EM++ G  P V++YT 
Sbjct: 250  SVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTC 309

Query: 789  LIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKNG 610
             IE YC+ KDFR V+A+  EMQ K C PNV+TYTI MHALGKAK+   AL +YE MK N 
Sbjct: 310  FIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNC 369

Query: 609  CVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDAL 430
            CVPD SFY+SLI++ +++GRL++A  +F++M K G +PD+ TYNTMI+ AC H + E+AL
Sbjct: 370  CVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENAL 429

Query: 429  KLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNGL 250
            KLL+ MEE  CKPD++TYAPLLK+CCR+K +K+L FLL+ MFK +IS+++GTY LLV GL
Sbjct: 430  KLLRRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGL 489

Query: 249  CKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAE 85
            CKSG +E AC FFEEMV+KG +P   TY  LVEELE+ N+ + KEKIQKLM Q E
Sbjct: 490  CKSGKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKLMFQTE 544


>ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Brachypodium distachyon]
          Length = 570

 Score =  485 bits (1248), Expect = e-134
 Identities = 228/422 (54%), Positives = 313/422 (74%)
 Frame = -3

Query: 1332 VSESLVETVMKRFSHDWISAFGLFKWYQKQTGYKTSPGLYDLIVDILGKAKMFDMMWDLV 1153
            VS  +V+ +++RF  DW++AFG F W   Q GY     LY+L+VDILGK K FD++W L+
Sbjct: 124  VSGRMVDKILRRFGSDWVAAFGFFMWAGAQEGYCHHADLYNLMVDILGKFKQFDLLWGLI 183

Query: 1152 VEMVFLGGLVSLTTISKIMRRLARAGRWVDAIITFREIERFGLIKDVVTMNVLLDSLCKE 973
             +M  +G LVSL T++K+MRRLA A RW DAI  F ++++FG+++D   MN LLD+LCKE
Sbjct: 184  RQMDEIGCLVSLATMTKVMRRLAGANRWTDAIDAFNKMDQFGVVRDTKAMNALLDTLCKE 243

Query: 972  RGVEHAWDVFSEFKNEIPPNSHTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYT 793
            + V+ A  VF E +  +PP+  +FN L+HG C+AR LN+A+ T++EME  G  P VITYT
Sbjct: 244  KSVKRARGVFQELRGVVPPDESSFNTLVHGWCQARMLNEARDTMKEMEEHGFSPSVITYT 303

Query: 792  SLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKN 613
            SLIEAYC +KDF+ V A+L+EM  KGC PNV+TYTIVMHALGKA  T +AL +++++K++
Sbjct: 304  SLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGRTQEALDVFDKVKRD 363

Query: 612  GCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDA 433
            GCVPD SFYNS+IYI  +AGRL++A+ +FDEM + G  P V  +NTMIS AC HSQ E+A
Sbjct: 364  GCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISAACDHSQAENA 423

Query: 432  LKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNG 253
            LK+L +MEE+ CKPD+KTY PLLK+CC+R+WMKIL FL+  MF+KDIS +  TY LLV  
Sbjct: 424  LKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPDFSTYILLVTW 483

Query: 252  LCKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAESLEN 73
            LC++G   Q+C F EEMVLKG +P   T+  ++E+L++ N+   K+KIQ L  +A +L++
Sbjct: 484  LCRNGKPAQSCLFLEEMVLKGFMPKQETFDLVMEKLDKGNLHSAKKKIQHLKLRAAALKH 543

Query: 72   LG 67
             G
Sbjct: 544  TG 545


>dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  484 bits (1247), Expect = e-134
 Identities = 225/422 (53%), Positives = 311/422 (73%)
 Frame = -3

Query: 1332 VSESLVETVMKRFSHDWISAFGLFKWYQKQTGYKTSPGLYDLIVDILGKAKMFDMMWDLV 1153
            VS+ +V+ +++RF  DW++AFG F W   Q GY+ S   Y+ +VDILGK K FD+MW L+
Sbjct: 124  VSDRMVDKILRRFGSDWVAAFGFFMWAGAQEGYRHSADSYNSMVDILGKFKQFDLMWGLI 183

Query: 1152 VEMVFLGGLVSLTTISKIMRRLARAGRWVDAIITFREIERFGLIKDVVTMNVLLDSLCKE 973
             +M  +GGLVSL T++K+MRRLA A RW DAI  F ++++FG++KD   MNVLLD+LCKE
Sbjct: 184  SQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLDTLCKE 243

Query: 972  RGVEHAWDVFSEFKNEIPPNSHTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYT 793
            R V+ A   F E +  +PP+  +FN L+HG CKAR +N+A+  ++EME  G  P VITYT
Sbjct: 244  RSVKRARGAFQELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHGFKPSVITYT 303

Query: 792  SLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKN 613
            SLIEAYC +KDF+ V A+L+EM+ KGC PNV+TYTIVMHALGKA  T +AL I+++++ +
Sbjct: 304  SLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEALDIFDKVRGD 363

Query: 612  GCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDA 433
            GC PD SFYNSLIYI  +AGRL++A+ + D+M   G  P V T+NT+IS AC HSQ E+A
Sbjct: 364  GCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAACDHSQAENA 423

Query: 432  LKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNG 253
            LK+L +MEE+ CKPD+KTY PLLK+CC+R+W+K+L FL+  MF+KDI+ +  TY+LLV  
Sbjct: 424  LKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDFSTYTLLVTW 483

Query: 252  LCKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAESLEN 73
            LC++G   Q+C F EEMVLKG  P   T+  + E+L++ N+   K+KIQ L  QA ++++
Sbjct: 484  LCRNGKPAQSCLFLEEMVLKGFAPKKETFDLVAEKLDKANLHSAKKKIQLLTLQAAAVKH 543

Query: 72   LG 67
             G
Sbjct: 544  NG 545


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  484 bits (1247), Expect = e-134
 Identities = 230/421 (54%), Positives = 314/421 (74%)
 Frame = -3

Query: 1332 VSESLVETVMKRFSHDWISAFGLFKWYQKQTGYKTSPGLYDLIVDILGKAKMFDMMWDLV 1153
            V+  LV+ ++ RFS+DW++AFG F W   Q GY      YDL+VDILGK K FD+MW L+
Sbjct: 1450 VTGCLVDKILTRFSNDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLI 1509

Query: 1152 VEMVFLGGLVSLTTISKIMRRLARAGRWVDAIITFREIERFGLIKDVVTMNVLLDSLCKE 973
             +MV +GGL+SL T++K+MRRLA A RW +AI  F +++RFG++KD   MNVLLD+LCKE
Sbjct: 1510 NQMVEVGGLMSLMTMTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKE 1569

Query: 972  RGVEHAWDVFSEFKNEIPPNSHTFNVLLHGCCKARQLNKAQWTIEEMERCGIHPCVITYT 793
            R V+ A  VF E +  IPP+ ++FN L+HG CKAR L +A  T+EEM++ G  P V+TYT
Sbjct: 1570 RSVKRARGVFQELRGTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYT 1629

Query: 792  SLIEAYCRDKDFRKVDALLDEMQFKGCSPNVVTYTIVMHALGKAKETYDALGIYERMKKN 613
            SL+EAYC +KDF+ V ALLDEM+ + C PNVVTYTI+MHALGKA  T +AL  ++++K++
Sbjct: 1630 SLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKED 1689

Query: 612  GCVPDTSFYNSLIYICSKAGRLQEASKIFDEMSKNGCTPDVTTYNTMISVACAHSQVEDA 433
            G  PD SFYNSLIYI  +AGRL++A  + +EM   G  P+VTT+NT+IS AC HSQ E+A
Sbjct: 1690 GVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENA 1749

Query: 432  LKLLQEMEERLCKPDLKTYAPLLKICCRRKWMKILFFLLSDMFKKDISLEVGTYSLLVNG 253
            LKLL +MEE+ C PD+KTY PLLK+CC+R+W+KIL FL+  MF+KDIS +  TY+LLV+ 
Sbjct: 1750 LKLLVKMEEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSW 1809

Query: 252  LCKSGNVEQACFFFEEMVLKGQVPWSSTYHRLVEELERKNMEKEKEKIQKLMTQAESLEN 73
            LC++G V Q+C F EEMV KG  P   T+  ++E+LE++N++   +KIQ L TQ  +L++
Sbjct: 1810 LCRNGKVAQSCLFLEEMVSKGFAPKQETFDLVMEKLEKRNLQSVYKKIQVLRTQVTNLKH 1869

Query: 72   L 70
            +
Sbjct: 1870 M 1870