BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021006
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   170   1e-40
emb|CBI37903.3| unnamed protein product [Vitis vinifera]              160   1e-37
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   160   1e-37
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   159   2e-37
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   158   5e-37

>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  170 bits (431), Expect = 1e-40
 Identities = 83/130 (63%), Positives = 101/130 (77%)
 Frame = -2

Query: 493 SLQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSW 314
           SL+ GKWVHL+L++TG K      NT L+NHLI+MY  CG    A KVF++MS RNLYSW
Sbjct: 65  SLKLGKWVHLHLKVTGLK----RPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSW 120

Query: 313 NNMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIG 134
           N MLSGYAKLG I   RKLFD+MPE+DVVSWNTMVI + K+GFCN+AL FY++ R L IG
Sbjct: 121 NGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIG 180

Query: 133 VNEFSFSGVL 104
            NE+SF+G+L
Sbjct: 181 YNEYSFAGLL 190



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 39/129 (30%), Positives = 77/129 (59%)
 Frame = -2

Query: 490 LQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWN 311
           L+  K  H  + + GF      +N ++S+ ++  Y  C     AR++F++M +R++ +W 
Sbjct: 199 LELSKQAHGQVLVAGF-----LSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWT 253

Query: 310 NMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGV 131
            M+SGYA+ G++   R+LFD MPE++ V+W +++  + ++   ++AL  + K  +L I  
Sbjct: 254 TMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRP 313

Query: 130 NEFSFSGVL 104
           ++F+FS  L
Sbjct: 314 DQFTFSSCL 322


>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  160 bits (405), Expect = 1e-37
 Identities = 83/130 (63%), Positives = 98/130 (75%)
 Frame = -2

Query: 493 SLQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSW 314
           +L++GK VHL+L+LTG K       T LSNHLI+MY  CG +  ARKVF+KMS RNLYSW
Sbjct: 74  ALREGKRVHLHLKLTGLK----RPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSW 129

Query: 313 NNMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIG 134
           NNMLSGYAKLG I   RKLFD+MPE+DVVSWNTMVI   + G+ +EAL FY +FR L I 
Sbjct: 130 NNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQ 189

Query: 133 VNEFSFSGVL 104
            N FSF+GVL
Sbjct: 190 CNGFSFAGVL 199



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 43/123 (34%), Positives = 74/123 (60%)
 Frame = -2

Query: 472 VHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWNNMLSGY 293
           VH  + + GF      +N +LS+ ++  Y+ CG    ARK+F++MS R++ +W  M+SGY
Sbjct: 214 VHGQILVAGF-----LSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 292 AKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGVNEFSFS 113
           AK G++    +LF EMPE++ VSW  ++  + +NG  ++AL  + K     +  ++F+FS
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 112 GVL 104
             L
Sbjct: 329 SCL 331


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  160 bits (405), Expect = 1e-37
 Identities = 83/130 (63%), Positives = 98/130 (75%)
 Frame = -2

Query: 493 SLQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSW 314
           +L++GK VHL+L+LTG K       T LSNHLI+MY  CG +  ARKVF+KMS RNLYSW
Sbjct: 74  ALREGKRVHLHLKLTGLK----RPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSW 129

Query: 313 NNMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIG 134
           NNMLSGYAKLG I   RKLFD+MPE+DVVSWNTMVI   + G+ +EAL FY +FR L I 
Sbjct: 130 NNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQ 189

Query: 133 VNEFSFSGVL 104
            N FSF+GVL
Sbjct: 190 CNGFSFAGVL 199



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 43/123 (34%), Positives = 74/123 (60%)
 Frame = -2

Query: 472 VHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWNNMLSGY 293
           VH  + + GF      +N +LS+ ++  Y+ CG    ARK+F++MS R++ +W  M+SGY
Sbjct: 214 VHGQILVAGF-----LSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 292 AKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGVNEFSFS 113
           AK G++    +LF EMPE++ VSW  ++  + +NG  ++AL  + K     +  ++F+FS
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 112 GVL 104
             L
Sbjct: 329 SCL 331


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score =  159 bits (402), Expect = 2e-37
 Identities = 79/132 (59%), Positives = 100/132 (75%)
 Frame = -2

Query: 493 SLQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSW 314
           SL+QGKW+H +L++TGFK      NTLLSNHLI MY+ CG    A KVF++M +RNLYSW
Sbjct: 61  SLKQGKWIHRHLKITGFK----RPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSW 116

Query: 313 NNMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIG 134
           NNM+SGY K G ++R R +FD MPERDVVSWNTMVI + ++G  +EAL FYK+FR   I 
Sbjct: 117 NNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIK 176

Query: 133 VNEFSFSGVLVS 98
            NEFSF+G+L +
Sbjct: 177 FNEFSFAGLLTA 188



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 45/129 (34%), Positives = 77/129 (59%)
 Frame = -2

Query: 490 LQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWN 311
           LQ  +  H  + + GF      +N +LS  +I  Y  CG  + A++ F++M+V++++ W 
Sbjct: 195 LQLNRQAHGQVLVAGF-----LSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWT 249

Query: 310 NMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGV 131
            ++SGYAKLG++    KLF EMPE++ VSW  ++  +V+ G  N AL  ++K  +L +  
Sbjct: 250 TLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKP 309

Query: 130 NEFSFSGVL 104
            +F+FS  L
Sbjct: 310 EQFTFSSCL 318


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  158 bits (399), Expect = 5e-37
 Identities = 79/127 (62%), Positives = 98/127 (77%)
 Frame = -2

Query: 481 GKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWNNML 302
           GK VHL+L+ TGFK   PTT  +++NHLI MY  CG D  ARKVF+KMSVRNLYSWN+ML
Sbjct: 81  GKCVHLHLKHTGFK--RPTT--IVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHML 136

Query: 301 SGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGVNEF 122
           +GYAKLG++   RKLFD M E+DVVSWNT+V+ + K G  NEA+G Y+ FR L +G N F
Sbjct: 137 AGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAF 196

Query: 121 SFSGVLV 101
           SF+GVL+
Sbjct: 197 SFAGVLI 203



 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/129 (32%), Positives = 77/129 (59%)
 Frame = -2

Query: 490 LQQGKWVHLYLRLTGFKYSHPTTNTLLSNHLIHMYL*CGSDKLARKVFNKMSVRNLYSWN 311
           LQ  K VH  + + GF      +N +LS+ ++  Y  CG  + AR +F++M V+++++W 
Sbjct: 211 LQLAKQVHGQVLVAGF-----LSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWT 265

Query: 310 NMLSGYAKLGNILRCRKLFDEMPERDVVSWNTMVIMFVKNGFCNEALGFYKKFRSLCIGV 131
            ++SGYAK G++    +LF +MPE++ VSW+ ++  + +N   +EAL ++ K     I  
Sbjct: 266 TIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINP 325

Query: 130 NEFSFSGVL 104
            +++FS  L
Sbjct: 326 EQYTFSSCL 334