BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020948
         (352 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containi...   145   4e-33
ref|XP_002516618.1| pentatricopeptide repeat-containing protein,...   138   5e-31
ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containi...   132   4e-29
ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28

>ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
           gi|296081989|emb|CBI20994.3| unnamed protein product
           [Vitis vinifera]
          Length = 597

 Score =  145 bits (365), Expect = 4e-33
 Identities = 73/117 (62%), Positives = 89/117 (76%)
 Frame = -2

Query: 351 LIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIRRG 172
           LIKM+CEEERL+L +Q+SKEMRARG D DLATSTM++HLLCK+HRLEEA  EFEDMIRRG
Sbjct: 432 LIKMMCEEERLDLAVQVSKEMRARGCDLDLATSTMLVHLLCKMHRLEEAFAEFEDMIRRG 491

Query: 171 IVPQXXXXXXXXXXXXKSGMTVMAQKLSSQMSSLPHSTRLPDTYREGGDGSREIRSS 1
           IVPQ            K G+T MA+KL   M+S+PHS++LP+TY   GD SR  ++S
Sbjct: 492 IVPQYLTFERMNNALRKRGLTEMARKLCDMMASVPHSSKLPNTYSGDGDASRARKTS 548


>ref|XP_002516618.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544438|gb|EEF45959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 577

 Score =  138 bits (347), Expect = 5e-31
 Identities = 71/117 (60%), Positives = 84/117 (71%)
 Frame = -2

Query: 351 LIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIRRG 172
           L+KMLCEEERL+L +QISKEMR+RG D DLATSTM+IHL C++HR EEA +EFEDMI++G
Sbjct: 411 LLKMLCEEERLDLAVQISKEMRSRGCDMDLATSTMLIHLFCRMHRFEEAFMEFEDMIQKG 470

Query: 171 IVPQXXXXXXXXXXXXKSGMTVMAQKLSSQMSSLPHSTRLPDTYREGGDGSREIRSS 1
           IVPQ            K GM   A+KLS  MSS+PHST LP+TY   GD  R  R S
Sbjct: 471 IVPQYLTFQRLNDELRKRGMVERARKLSDMMSSVPHSTNLPNTYSVEGDALRRARRS 527


>ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score =  133 bits (335), Expect = 1e-29
 Identities = 68/106 (64%), Positives = 80/106 (75%)
 Frame = -2

Query: 351 LIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIRRG 172
           L+KMLCEEE+L+L +Q+SKEMR  G+D DLATSTM++HLLCK+ RLEEA VEFEDMIRRG
Sbjct: 457 LVKMLCEEEKLDLAVQVSKEMRHNGYDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRG 516

Query: 171 IVPQXXXXXXXXXXXXKSGMTVMAQKLSSQMSSLPHSTRLPDTYRE 34
           IVPQ            K GMT MAQKL   MSS+P+S  LP+TY E
Sbjct: 517 IVPQYLTFQRMKADLKKQGMTEMAQKLCKLMSSVPYSPNLPNTYGE 562


>ref|XP_004136469.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
           gi|449503560|ref|XP_004162063.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Cucumis sativus]
          Length = 615

 Score =  132 bits (331), Expect = 4e-29
 Identities = 67/117 (57%), Positives = 80/117 (68%)
 Frame = -2

Query: 351 LIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIRRG 172
           L+KMLCEEERL L +Q+  EM+ARG D DLATSTM++HLLCK+H+ EEA  EFE MI RG
Sbjct: 448 LLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRG 507

Query: 171 IVPQXXXXXXXXXXXXKSGMTVMAQKLSSQMSSLPHSTRLPDTYREGGDGSREIRSS 1
           IVPQ            K G+T MA KL   MSS+PHS +LPDTY +  D  R  R+S
Sbjct: 508 IVPQYLTFCRLHDEFMKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPDSIRARRTS 564


>ref|XP_003572081.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 541

 Score =  130 bits (326), Expect = 1e-28
 Identities = 66/116 (56%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
 Frame = -2

Query: 351 LIKMLCEEERLELVLQISKEMRARGHDSDLATSTMVIHLLCKLHRLEEACVEFEDMIRRG 172
           LIKMLCE  RLELV+Q+ KEM+  G +SDLATSTM+IHLLC+ H+ EEACVEFEDM RRG
Sbjct: 369 LIKMLCEANRLELVVQMIKEMKTSGFESDLATSTMLIHLLCRSHQFEEACVEFEDMFRRG 428

Query: 171 IVPQXXXXXXXXXXXXKSGMTVMAQKLSSQMSSLPHSTRLPDTYRE-GGDGSREIR 7
           +VPQ            + G+  + +KL++ M S+PHST+LP +YRE  GD +RE R
Sbjct: 429 LVPQYITYRMLMKEIKRLGLVELVEKLTNLMRSVPHSTKLPGSYREKEGDDAREKR 484