BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020941
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,...    86   4e-15
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|NP_199470.1| pentatricopeptide repeat-containing protein [Ar...    80   1e-13
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...    80   1e-13

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/77 (55%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
 Frame = +1

Query: 175 TNFQEEQNPTPNDSLSNQLKPISLTLLTDANSPS--LLSKPKSTWVNPSKPKRSVLSLQR 348
           T+   EQ    N SLS QLKP+S T+LT  +S    L+SKPKSTW+NP+KPK SVLSLQR
Sbjct: 61  TSSDSEQTNHQNPSLSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQR 120

Query: 349 HKKDTYTQNPKLNDLRM 399
           HK+  Y+ NP++ DL++
Sbjct: 121 HKRHNYSYNPQIRDLKL 137


>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 677

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 57/136 (41%), Positives = 74/136 (54%), Gaps = 15/136 (11%)
 Frame = +1

Query: 37  MAASSILSTSILDL---HNSKNKNKPIFHFSSPFXXXXXXXXXXXXXX------QTNFQE 189
           MAA+S+ +     L   H+S  K   +F  SSP                     +T+   
Sbjct: 1   MAAASLSAAPDFHLTITHHSDKKKPILFTSSSPITITHNNNPYRRRLTISCNSRKTSKHL 60

Query: 190 EQNPTP-NDSLSNQLKPISLTLL-----TDANSPSLLSKPKSTWVNPSKPKRSVLSLQRH 351
            ++P P N SLS+QLKP+S T L     T     SLLSKP STWVNP+KPKRSVLSLQR 
Sbjct: 61  SESPNPKNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQ 120

Query: 352 KKDTYTQNPKLNDLRM 399
           K+  Y+ NPK+ +LR+
Sbjct: 121 KRSPYSLNPKVKELRL 136


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
           gi|449521148|ref|XP_004167592.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
 Frame = +1

Query: 208 NDSLSNQLKPISLTLLTDA--NSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDTYTQNPK 381
           N SLS QLK +S T L++A  +   LLSKPKSTWVNP+KPKRSVLSLQR K+ +Y+ NPK
Sbjct: 58  NPSLSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSYNPK 117

Query: 382 LNDLR 396
           + DL+
Sbjct: 118 MRDLK 122


>ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
           gi|8885599|dbj|BAA97529.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008017|gb|AED95400.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 711

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/71 (56%), Positives = 50/71 (70%)
 Frame = +1

Query: 184 QEEQNPTPNDSLSNQLKPISLTLLTDANSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDT 363
           +EE   T   SLS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSLQR K+  
Sbjct: 54  EEEPITTKTPSLSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSA 112

Query: 364 YTQNPKLNDLR 396
           Y+ NP++ DLR
Sbjct: 113 YSYNPQIKDLR 123


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297309232|gb|EFH39656.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 711

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/71 (56%), Positives = 50/71 (70%)
 Frame = +1

Query: 184 QEEQNPTPNDSLSNQLKPISLTLLTDANSPSLLSKPKSTWVNPSKPKRSVLSLQRHKKDT 363
           +EE   T   SLS QLKP+S T L    +  +LSKPKS WVNP++PKRSVLSLQR K+  
Sbjct: 54  EEEPITTKTPSLSEQLKPLSATTLRQEQT-QILSKPKSVWVNPTRPKRSVLSLQRQKRSA 112

Query: 364 YTQNPKLNDLR 396
           Y+ NP++ DLR
Sbjct: 113 YSYNPQIKDLR 123