BLASTX nr result
ID: Coptis21_contig00020792
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00020792
(1359 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Viti... 498 e-138
ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|2... 464 e-128
ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata sub... 458 e-126
ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thalia... 456 e-126
ref|XP_002307489.1| f-box family protein [Populus trichocarpa] g... 453 e-125
>ref|XP_002266510.1| PREDICTED: SKP1-interacting partner 15 [Vitis vinifera]
Length = 374
Score = 498 bits (1282), Expect = e-138
Identities = 247/378 (65%), Positives = 287/378 (75%), Gaps = 7/378 (1%)
Frame = +2
Query: 113 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 292
MD SP++ LPQDTLH IFS LPLRQIIICRSVC+FF LT+ +F+ LIST+ PPL LIA
Sbjct: 1 MDASPIYRLPQDTLHYIFSTLPLRQIIICRSVCKFFYQTLTAPAFMELISTQ-PPLNLIA 59
Query: 293 LRPXXXXXXXXXXXLI-------FLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 451
LRP LHV+DP+ NQW++F L+FLP + P PV+SSLGLVYL
Sbjct: 60 LRPPHHHHHHHHHHHNRDVSSHNALHVFDPSSNQWVRFPLSFLPFRSPTPVASSLGLVYL 119
Query: 452 WVDSPXXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAAL 631
W DS +KSL+VCNPLTR ++VLPQLGSAWS+HG+VLVGS +RVLVLTELA L
Sbjct: 120 WADS---LNSLESNKSLIVCNPLTRSFQVLPQLGSAWSRHGSVLVGSPNRVLVLTELATL 176
Query: 632 FYSGSGSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSRGWN 811
++SGS WLKFSSNLPSKPRSP+LV DSV ALCDVGSPWRSQWKLF CT+ L+KS+ W
Sbjct: 177 YFSGSDQWLKFSSNLPSKPRSPILVSDSVLALCDVGSPWRSQWKLFACTLNHLQKSQPWT 236
Query: 812 RLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXXXEWDE 991
RL++HEWGDVFDIL+RPRLV G+GN+ILMVGGLKSSFSL CS EWDE
Sbjct: 237 RLDRHEWGDVFDILRRPRLVKGLGNQILMVGGLKSSFSLNAVCSTILILRLDLDSLEWDE 296
Query: 992 AGRMPLNMFNYFHESGKFKVFGGGDRVCFSAKRVKRLAMWDCGLGAGKGEWKWIDGVPGN 1171
GRMP MF F ES KFKVFG G+RVCFSAKRV RLA+WD GKG+W+WI+GVPGN
Sbjct: 297 LGRMPPEMFRCFQESSKFKVFGAGNRVCFSAKRVGRLALWDYSTETGKGDWRWINGVPGN 356
Query: 1172 GDGLCRGFVYEARLDAVP 1225
GDGL RGFV++ARL A+P
Sbjct: 357 GDGLFRGFVFQARLTALP 374
>ref|XP_002300927.1| predicted protein [Populus trichocarpa] gi|222842653|gb|EEE80200.1|
predicted protein [Populus trichocarpa]
Length = 376
Score = 464 bits (1193), Expect = e-128
Identities = 233/383 (60%), Positives = 288/383 (75%), Gaps = 12/383 (3%)
Frame = +2
Query: 113 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 292
MD SP++ LPQDTLHQIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST+ PPLR +A
Sbjct: 1 MDDSPINRLPQDTLHQIFSSLPLRQIMICRSVCKFFNQMLTSPSFVDLISTQ-PPLRFLA 59
Query: 293 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 451
LRP + +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YL
Sbjct: 60 LRPPHHHHHLHHQRQNSHVSSVPYLHVFDPDQNQWLRFSLSFLPFRSPHPVASASGLIYL 119
Query: 452 WVDSPXXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAA 628
W +SP ++SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAA
Sbjct: 120 WGESPTSIES---NRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAA 176
Query: 629 LFYSGSG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS 799
L++S + SWL FS+NLPSKPRSP+L+ DSVFALCDVGSPWRSQWKLF C +++L +
Sbjct: 177 LYFSNTNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSPWRSQWKLFTCILSKLNNN 236
Query: 800 -RGWNRLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXX 976
W LE+ EWGD+FDI+KRPRLV G GN++LM+GGLKS+FSL TSCS
Sbjct: 237 YNNWVCLERQEWGDIFDIIKRPRLVRGKGNKLLMIGGLKSNFSLNTSCSTILILRLDLER 296
Query: 977 XEWDEAGRMPLNMFNYFHESGKFKVFGGGDRVCFSAKRVKRLAMWDCGLGAGKGEWKWID 1156
EW+EAGRMP++M+ F ES K KVFGGGDRVCFSAKR+++LA+WD G W+WI+
Sbjct: 297 LEWEEAGRMPVDMYRSFQESSKLKVFGGGDRVCFSAKRMRKLALWDDCDGV---VWRWIE 353
Query: 1157 GVPGNGDGLCRGFVYEARLDAVP 1225
GVP GDGLCRGFV+EA A+P
Sbjct: 354 GVPVGGDGLCRGFVFEAGRTALP 376
>ref|XP_002887662.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
gi|297333503|gb|EFH63921.1| F-box family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 374
Score = 458 bits (1178), Expect = e-126
Identities = 231/383 (60%), Positives = 280/383 (73%), Gaps = 12/383 (3%)
Frame = +2
Query: 113 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 292
M++SP++ LP D+LHQIFS LPLR I++CRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPINRLPPDSLHQIFSSLPLRDIMVCRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 293 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 451
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 452 WVDSPXXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAAL 631
W DS KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL
Sbjct: 120 WGDS---IDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAAL 176
Query: 632 FYSGS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR 802
+YSG+ W KFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L +
Sbjct: 177 YYSGTVVANQWFKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITH 236
Query: 803 -GWNRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATSCSXXXXXXXXXXX 976
W LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL +CS
Sbjct: 237 TNWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLES 296
Query: 977 XEWDEAGRMPLNMFNYFHESGKFKVFGGGDRVCFSAKRVKRLAMWDCGLGAGKGEWKWID 1156
EW+EAGRMPL M+ F ES KFKVFGGGDRV FSAKR+ +LAMWDC G W+WID
Sbjct: 297 LEWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWEG-----WRWID 351
Query: 1157 GVPGNGDGLCRGFVYEARLDAVP 1225
GVPG DGLCRGFV++A+L +P
Sbjct: 352 GVPGYADGLCRGFVFDAKLTMMP 374
>ref|NP_565142.1| SKP1-interacting partner 15 [Arabidopsis thaliana]
gi|75098682|sp|O49279.1|SKI15_ARATH RecName:
Full=SKP1-interacting partner 15; AltName: Full=F-box
only protein 3 gi|2829924|gb|AAC00632.1| Unknown protein
[Arabidopsis thaliana] gi|17473630|gb|AAL38278.1| unknown
protein [Arabidopsis thaliana] gi|21553606|gb|AAM62699.1|
F-box protein AtFBX3 [Arabidopsis thaliana]
gi|30725584|gb|AAP37814.1| At1g76920 [Arabidopsis
thaliana] gi|332197782|gb|AEE35903.1| SKP1-interacting
partner 15 [Arabidopsis thaliana]
Length = 374
Score = 456 bits (1174), Expect = e-126
Identities = 231/383 (60%), Positives = 281/383 (73%), Gaps = 12/383 (3%)
Frame = +2
Query: 113 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 292
M++SP++ LP D+LHQIFS LP+R I+ICRSVC+FFN +LTSQ F+ +ISTR PPL L+A
Sbjct: 1 MESSPVNCLPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTR-PPLNLLA 59
Query: 293 LRPXXXXXXXXXXX-------LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYL 451
LRP ++HVYDP NQW +F+L+FLP + P PV+SS GL+YL
Sbjct: 60 LRPPHHHHSHRHSGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYL 119
Query: 452 WVDSPXXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSAHRVLVLTELAAL 631
W DS KSLV CNPLTR ++VLPQLGSAWS+HGTVLV S +RV+VLTELAAL
Sbjct: 120 WGDS---IDLAESSKSLVACNPLTRQFKVLPQLGSAWSRHGTVLVDSVNRVMVLTELAAL 176
Query: 632 FYSGS---GSWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKSR 802
+YSG+ WLKFSSNLPSKPRSPVL+ SVFALCDVGSPWRSQWKLF+C +T L +
Sbjct: 177 YYSGTVVANQWLKFSSNLPSKPRSPVLMSSSVFALCDVGSPWRSQWKLFSCKLTNLTITH 236
Query: 803 -GWNRLEKHEWGDVFDILKRPRLVHGIGN-RILMVGGLKSSFSLATSCSXXXXXXXXXXX 976
W LEKHEWGD+FDI+KRPRL+ G G+ ++LM+GGLKS+FSL +CS
Sbjct: 237 TNWVCLEKHEWGDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLES 296
Query: 977 XEWDEAGRMPLNMFNYFHESGKFKVFGGGDRVCFSAKRVKRLAMWDCGLGAGKGEWKWID 1156
EW+EAGRMPL M+ F ES KFKVFGGGDRV FSAKR+ +LAMWDC G W+WI+
Sbjct: 297 LEWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMGKLAMWDCWQG-----WRWIE 351
Query: 1157 GVPGNGDGLCRGFVYEARLDAVP 1225
GVPG DGLCRGFV++A+L +P
Sbjct: 352 GVPGYADGLCRGFVFDAKLTLMP 374
>ref|XP_002307489.1| f-box family protein [Populus trichocarpa]
gi|222856938|gb|EEE94485.1| f-box family protein [Populus
trichocarpa]
Length = 374
Score = 453 bits (1166), Expect = e-125
Identities = 232/380 (61%), Positives = 282/380 (74%), Gaps = 10/380 (2%)
Frame = +2
Query: 113 MDTSPLHHLPQDTLHQIFSHLPLRQIIICRSVCRFFNHILTSQSFLTLISTRSPPLRLIA 292
MD SP++ LPQDTL+QIFS LPLRQI+ICRSVC+FFN +LTS SF+ LIST++P LR +A
Sbjct: 1 MDASPINRLPQDTLNQIFSSLPLRQIMICRSVCKFFNQMLTSPSFMDLISTQTP-LRFLA 59
Query: 293 LRPXXXXXXXXXXX-----LIFLHVYDPNLNQWLKFSLNFLPCKIPIPVSSSLGLVYLWV 457
LRP L +LHV+DP+ NQWL+FSL+FLP + P PV+S+ GL+YLW
Sbjct: 60 LRPPHHHHHHQRHNSHVSSLPYLHVFDPDQNQWLRFSLSFLPFRSPQPVASASGLLYLWG 119
Query: 458 DSPXXXXXXXXHKSLVVCNPLTRVYRVLPQLGSAWSKHGTVLVGSA-HRVLVLTELAALF 634
+SP ++SLVVCNPLTR ++VLPQLGSAWS+HG+VLV S HRV+VLTELAAL+
Sbjct: 120 ESPNSLES---NRSLVVCNPLTRQFQVLPQLGSAWSRHGSVLVDSVNHRVMVLTELAALY 176
Query: 635 YSGSG---SWLKFSSNLPSKPRSPVLVHDSVFALCDVGSPWRSQWKLFNCTITELEKS-R 802
+S + SWL FS+NLPSKPRSP+L+ DSVFALCDVGS WRSQWKLF CT+T L S
Sbjct: 177 FSNTNKTNSWLTFSANLPSKPRSPILISDSVFALCDVGSRWRSQWKLFTCTLTNLNNSYN 236
Query: 803 GWNRLEKHEWGDVFDILKRPRLVHGIGNRILMVGGLKSSFSLATSCSXXXXXXXXXXXXE 982
W L + EWGD+FDI+KRPRLV G GN++LM+G LKS+FSL SCS E
Sbjct: 237 NWVCLGRLEWGDIFDIIKRPRLVRGKGNKLLMIGVLKSNFSLNPSCSTILILRLDLARME 296
Query: 983 WDEAGRMPLNMFNYFHESGKFKVFGGGDRVCFSAKRVKRLAMWDCGLGAGKGEWKWIDGV 1162
W+EAGRMP M+ F ES KFK+FGGGDRVC SAKRV +LA+WD G W+WI+GV
Sbjct: 297 WEEAGRMPSEMYKSFQESSKFKIFGGGDRVCLSAKRVGKLALWDDCDGV---VWRWIEGV 353
Query: 1163 PGNGDGLCRGFVYEARLDAV 1222
PG GDGLCRGFV+EA L A+
Sbjct: 354 PGGGDGLCRGFVFEASLTAL 373