BLASTX nr result
ID: Coptis21_contig00020757
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00020757
(284 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containi... 130 1e-28
ref|XP_002524030.1| pentatricopeptide repeat-containing protein,... 121 7e-26
emb|CBI38550.3| unnamed protein product [Vitis vinifera] 119 3e-25
ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containi... 119 3e-25
emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera] 119 3e-25
>ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Glycine max]
Length = 1012
Score = 130 bits (326), Expect = 1e-28
Identities = 60/93 (64%), Positives = 72/93 (77%)
Frame = +3
Query: 3 GIHLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAAT 182
G H++ A + YSQMLV G+SPN+ TYN LL GLS GLM AD L EM+ R L+PNA T
Sbjct: 738 GSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATT 797
Query: 183 YNALVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
YN LVSGHG+VGNKR+S+K YCEMI KG+IP+T
Sbjct: 798 YNILVSGHGRVGNKRDSIKLYCEMITKGFIPTT 830
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/80 (40%), Positives = 50/80 (62%)
Frame = +3
Query: 27 SLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVSGH 206
SLY QM++ GV P+VVT +++L+GL + G +T+A L EM N L PN +Y ++S
Sbjct: 257 SLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISAL 316
Query: 207 GKVGNKRESVKYYCEMIVKG 266
K G E+ + +M+V+G
Sbjct: 317 LKSGRVMEAFNHQSQMVVRG 336
Score = 62.4 bits (150), Expect = 4e-08
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
++ LY +M+ +G P TYN L+ +KAG M QA +L +EM R IPN++TY+ L+
Sbjct: 814 SIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLIC 873
Query: 201 GHG------------KVGNKRESVKYYCEMIVKGYIPS 278
G K+ + E+ K EM KG++PS
Sbjct: 874 GWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGHVPS 911
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +3
Query: 27 SLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVSGH 206
S++S+M+ G++P+ VTYN++++ G A DL +EMK+ ++PN TYN L+ G
Sbjct: 571 SVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGL 630
Query: 207 GKVGNKRESVKYYCEMIVKGYIPS 278
K G + + EM+ GY+P+
Sbjct: 631 CKTGAIEKVISVLHEMLAVGYVPT 654
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%)
Frame = +3
Query: 12 LKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNA 191
++ A L S+M G+ PN TYN L+ G + G + L+ EM + IP TYN
Sbjct: 776 MRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNV 835
Query: 192 LVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
L+ + K G R++ + EM+ +G IP++
Sbjct: 836 LIQDYAKAGKMRQARELLNEMLTRGRIPNS 865
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/67 (41%), Positives = 43/67 (64%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A + SQM+V G+S ++V T++ GL KAG +A+++F + L+PN TY AL+
Sbjct: 325 AFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLD 384
Query: 201 GHGKVGN 221
GH KVG+
Sbjct: 385 GHCKVGD 391
>ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536757|gb|EEF38398.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1016
Score = 121 bits (303), Expect = 7e-26
Identities = 53/91 (58%), Positives = 74/91 (81%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
H+K A++ Y+QML EGVSPN+VTYN LL GL AGLM + D+LFD+MK L P+A+TY+
Sbjct: 742 HVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYD 801
Query: 189 ALVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
L+SG+GK+GNK+ES++ YCEM+ +G++P T
Sbjct: 802 TLISGYGKIGNKKESIRLYCEMVAQGFVPKT 832
Score = 62.8 bits (151), Expect = 3e-08
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +3
Query: 12 LKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNA 191
L+ A +LY +M++ G P+VVTY+++++GL K G +++A +L EMK + PN Y
Sbjct: 254 LEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTT 313
Query: 192 LVSGHGKVGNKRESVKYYCEMIVKG 266
L+ K G+ E+ +++V+G
Sbjct: 314 LIDSLFKAGSAWEAFACQSQLVVRG 338
Score = 59.3 bits (142), Expect = 3e-07
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 9 HLKY-AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATY 185
H KY A S+YS M+ G++PN TYN ++ K G + A +L++EMK+ ++P++ T
Sbjct: 566 HGKYEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITC 625
Query: 186 NALVSGHGKVGNKRESVKYYCEMIVKGYIPS 278
N LV G + G +++ EM V G P+
Sbjct: 626 NTLVVGLSEAGEIEKAMNVLNEMSVMGIHPN 656
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/80 (32%), Positives = 51/80 (63%)
Frame = +3
Query: 27 SLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVSGH 206
SL +M + ++PNV+TY+++++G +K G++ +A ++ +M ++ +IPNA Y L+ G+
Sbjct: 399 SLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGY 458
Query: 207 GKVGNKRESVKYYCEMIVKG 266
K G + + Y EM + G
Sbjct: 459 CKAGKQEIATDLYNEMKLSG 478
>emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 119 bits (298), Expect = 3e-25
Identities = 57/91 (62%), Positives = 70/91 (76%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
HLK A +++SQML EGVSPNV TYN LL GLS A L+ +A L ++MK R L+PNA TY+
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650
Query: 189 ALVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
LVSGHGK+GN +E VK YCEMI KG++P T
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKT 681
Score = 64.7 bits (156), Expect = 7e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A L +M+V G+ +VV Y L+ GL KAG+ A+D+F + L+PN TY+AL+
Sbjct: 176 AFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIPS 278
GH K+G+ + EM K P+
Sbjct: 236 GHCKLGDVNKGELLLQEMEEKHIFPN 261
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +3
Query: 12 LKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNA 191
L+ A+ +Y +M V+ + P+VVTY +++GL K+G + +A +F EM+ ++PN +Y
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162
Query: 192 LVSGHGKVGNKRESVKYYCEMIVKG 266
L+ K GN E+ M+V+G
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRG 187
Score = 57.0 bits (136), Expect = 2e-06
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
++K + LY +M+ +G P TYN L+ +K M+QA +L EM+ R + PN++TY+
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD 720
Query: 189 ALVSGHGKVGN------------KRESVKYYCEMIVKGYIP 275
L+ G K+ + E+ + + EM KG+IP
Sbjct: 721 ILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A+ L M EG +P++VTYNTL++G K G + A L E+ L PN TY L+
Sbjct: 36 AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIP 275
+ K +++ Y EM VK +P
Sbjct: 96 AYCKSQCLEDALYMYDEMTVKSLVP 120
>ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 119 bits (298), Expect = 3e-25
Identities = 57/91 (62%), Positives = 70/91 (76%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
HLK A +++SQML EGVSPNV TYN LL GLS A L+ +A L ++MK R L+PNA TY+
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650
Query: 189 ALVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
LVSGHGK+GN +E VK YCEMI KG++P T
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKT 681
Score = 64.7 bits (156), Expect = 7e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A L +M+V G+ +VV Y L+ GL KAG+ A+D+F + L+PN TY+AL+
Sbjct: 176 AFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIPS 278
GH K+G+ + EM K P+
Sbjct: 236 GHCKLGDVNKGELLLQEMEEKHIFPN 261
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +3
Query: 12 LKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNA 191
L+ A+ +Y +M V+ + P+VVTY +++GL K+G + +A +F EM+ ++PN +Y
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162
Query: 192 LVSGHGKVGNKRESVKYYCEMIVKG 266
L+ K GN E+ M+V+G
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRG 187
Score = 57.0 bits (136), Expect = 2e-06
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
++K + LY +M+ +G P TYN L+ +K M+QA +L EM+ R + PN++TY+
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD 720
Query: 189 ALVSGHGKVGN------------KRESVKYYCEMIVKGYIP 275
L+ G K+ + E+ + + EM KG+IP
Sbjct: 721 ILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A+ L M EG +P++VTYNTL++G K G + A L E+ L PN TY L+
Sbjct: 36 AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIP 275
+ K +++ Y EM VK +P
Sbjct: 96 AYCKSQCLEDALYMYDEMTVKSLVP 120
>emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 119 bits (298), Expect = 3e-25
Identities = 57/91 (62%), Positives = 70/91 (76%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
HLK A +++SQML EGVSPNV TYN LL GLS A L+ +A L ++MK R L+PNA TY+
Sbjct: 591 HLKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYD 650
Query: 189 ALVSGHGKVGNKRESVKYYCEMIVKGYIPST 281
LVSGHGK+GN +E VK YCEMI KG++P T
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKT 681
Score = 64.7 bits (156), Expect = 7e-09
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A L +M+V G+ +VV Y L+ GL KAG+ A+D+F + L+PN TY+AL+
Sbjct: 176 AFVLQGRMVVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALID 235
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIPS 278
GH K+G+ + EM K P+
Sbjct: 236 GHCKLGDVNKGELLLQEMEEKHIFPN 261
Score = 59.3 bits (142), Expect = 3e-07
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +3
Query: 12 LKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNA 191
L+ A+ +Y +M V+ + P+VVTY +++GL K+G + +A +F EM+ ++PN +Y
Sbjct: 103 LEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYAT 162
Query: 192 LVSGHGKVGNKRESVKYYCEMIVKG 266
L+ K GN E+ M+V+G
Sbjct: 163 LIDSLFKEGNVAEAFVLQGRMVVRG 187
Score = 57.0 bits (136), Expect = 2e-06
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Frame = +3
Query: 9 HLKYAMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYN 188
++K + LY +M+ +G P TYN L+ +K M+QA +L EM+ R + PN++TY+
Sbjct: 661 NMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYD 720
Query: 189 ALVSGHGKVGN------------KRESVKYYCEMIVKGYIP 275
L+ G K+ + E+ + + EM KG+IP
Sbjct: 721 ILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = +3
Query: 21 AMSLYSQMLVEGVSPNVVTYNTLLHGLSKAGLMTQADDLFDEMKNRCLIPNAATYNALVS 200
A+ L M EG +P++VTYNTL++G K G + A L E+ L PN TY L+
Sbjct: 36 AVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLID 95
Query: 201 GHGKVGNKRESVKYYCEMIVKGYIP 275
+ K +++ Y EM VK +P
Sbjct: 96 AYCKSQCLEDALYMYDEMTVKSLVP 120