BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020560
         (1195 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large...   132   2e-28
gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indi...   132   2e-28
ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group] g...   132   2e-28
gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-c...   132   2e-28
sp|Q2QZL4.2|U2A2B_ORYSJ RecName: Full=Splicing factor U2af large...   132   2e-28

>sp|Q2QKB4.1|U2A2B_WHEAT RecName: Full=Splicing factor U2af large subunit B; AltName: Full=U2
            auxiliary factor 65 kDa subunit B; AltName: Full=U2 small
            nuclear ribonucleoprotein auxiliary factor large subunit
            B; Short=U2 snRNP auxiliary factor large subunit B
            gi|68036764|gb|AAY84880.1| U2AF large subunit [Triticum
            aestivum]
          Length = 543

 Score =  132 bits (331), Expect = 2e-28
 Identities = 69/114 (60%), Positives = 85/114 (74%)
 Frame = -1

Query: 1015 SRHACRVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIV 836
            +RHA RV+VGGLP  AN+QS+A +FN  MA I    A      DAVL++Y+N D  FA V
Sbjct: 203  TRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 259

Query: 835  EVRSVELASNAMALDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVV 674
            E+RSVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 260  EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAV 313



 Score = 64.3 bits (155), Expect = 6e-08
 Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 5/249 (2%)
 Frame = -1

Query: 1000 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIVEVRSV 821
            R+FVGGLP    +  +      F              +D V D    +   +A    + +
Sbjct: 328  RIFVGGLPYYFTEAQVRELLESFGPLRG---------FDLVKDRETGNSKGYAFCVYQDL 378

Query: 820  ELASNAMA-LDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVVPRQALDTLID 644
             +   A A L+G+      L +RR N          G  QP          R   + ++ 
Sbjct: 379  NVTDIACAALNGIKMGDKTLTVRRANQ---------GSAQP----------RPEQENIL- 418

Query: 643  LDTKFGRTLQAQALEARIQHSYQCDILPSRVLCLLNAVLLD-IWDDRD--SLSQYLRSEA 473
                    LQAQ      +  YQ   LP++V+CL   V  D + DD +   + + +R EA
Sbjct: 419  --------LQAQQQVQLQKLVYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEA 470

Query: 472  QTYGKLKDADSPRLIFNKEN-STVVTVFFEYTDIAGSVEAVKGINGRMLKNMHHIAVYYP 296
              YG L     PR   + E  S V  VF EY D+ GS +A   ++GR       +AV+YP
Sbjct: 471  GKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 530

Query: 295  EEEYLNGDY 269
            E ++ + DY
Sbjct: 531  ENKFADEDY 539


>gb|EEC74054.1| hypothetical protein OsI_09051 [Oryza sativa Indica Group]
          Length = 548

 Score =  132 bits (331), Expect = 2e-28
 Identities = 69/114 (60%), Positives = 85/114 (74%)
 Frame = -1

Query: 1015 SRHACRVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIV 836
            +RHA RV+VGGLP  AN+QS+A +FN  MA I    A      DAVL++Y+N D  FA V
Sbjct: 210  TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 266

Query: 835  EVRSVELASNAMALDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVV 674
            E+RSVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 267  EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 320



 Score = 57.8 bits (138), Expect = 5e-06
 Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -1

Query: 1000 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIVEVRSV 821
            R+FVGGLP    +  +      F              +D V D    +   +A    + +
Sbjct: 335  RIFVGGLPYYFTEAQVRELLESFGPLRG---------FDLVKDRETGNSKGYAFCVYQDL 385

Query: 820  ELASNAMA-LDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVVPRQALDTLID 644
             +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 386  NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 429

Query: 643  LDTKFGRTLQAQALEARIQHSYQCDILPSRVLCLLNAVLLD-IWDDRD--SLSQYLRSEA 473
                  + +Q Q L       YQ   LP++V+CL   V  D + DD +   + + +R E+
Sbjct: 430  ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLES 477

Query: 472  QTYGKLKDADSPRLI-FNKENSTVVTVFFEYTDIAGSVEAVKGINGRMLKNMHHIAVYYP 296
              YG L     PR        + V  VF EY D+ G+ +A   ++GR       +AV+YP
Sbjct: 478  GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 537

Query: 295  EEEYLNGDY 269
            E ++ + +Y
Sbjct: 538  ENKFASAEY 546


>ref|NP_001068459.1| Os11g0682300 [Oryza sativa Japonica Group]
            gi|113645681|dbj|BAF28822.1| Os11g0682300, partial [Oryza
            sativa Japonica Group]
          Length = 378

 Score =  132 bits (331), Expect = 2e-28
 Identities = 69/114 (60%), Positives = 85/114 (74%)
 Frame = -1

Query: 1015 SRHACRVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIV 836
            +RHA RV+VGGLP  AN+QS+A +FN  MA I    A      DAVL++Y+N D  FA V
Sbjct: 40   TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 96

Query: 835  EVRSVELASNAMALDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVV 674
            E+RSVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 97   EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 150



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -1

Query: 1000 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIVEVRSV 821
            R+FVGGLP    +  +      F              +D V D    +   +A    + +
Sbjct: 165  RIFVGGLPYYFTEAQVRELLESFGPLRG---------FDLVKDRETGNSKGYAFCVYQDL 215

Query: 820  ELASNAMA-LDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVVPRQALDTLID 644
             +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 216  NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 259

Query: 643  LDTKFGRTLQAQALEARIQHSYQCDILPSRVLCLLNAVLLD-IWDDRD--SLSQYLRSEA 473
                  + +Q Q L       YQ   LP++V+CL   V  D + DD +   + + +R EA
Sbjct: 260  ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEA 307

Query: 472  QTYGKLKDADSPRLI-FNKENSTVVTVFFEYTDIAGSVEAVKGINGRMLKNMHHIAVYYP 296
              YG L     PR        + V  VF EY D+ G+ +A   ++GR       +AV+YP
Sbjct: 308  GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 367

Query: 295  EEEYLNGDY 269
            E ++ + +Y
Sbjct: 368  ENKFSSAEY 376


>gb|ABG22574.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
            [Oryza sativa Japonica Group]
          Length = 366

 Score =  132 bits (331), Expect = 2e-28
 Identities = 69/114 (60%), Positives = 85/114 (74%)
 Frame = -1

Query: 1015 SRHACRVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIV 836
            +RHA RV+VGGLP  AN+QS+A +FN  MA I    A      DAVL++Y+N D  FA V
Sbjct: 28   TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 84

Query: 835  EVRSVELASNAMALDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVV 674
            E+RSVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 85   EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 138



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -1

Query: 1000 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIVEVRSV 821
            R+FVGGLP    +  +      F              +D V D    +   +A    + +
Sbjct: 153  RIFVGGLPYYFTEAQVRELLESFGPLRG---------FDLVKDRETGNSKGYAFCVYQDL 203

Query: 820  ELASNAMA-LDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVVPRQALDTLID 644
             +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 204  NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 247

Query: 643  LDTKFGRTLQAQALEARIQHSYQCDILPSRVLCLLNAVLLD-IWDDRD--SLSQYLRSEA 473
                  + +Q Q L       YQ   LP++V+CL   V  D + DD +   + + +R EA
Sbjct: 248  ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEA 295

Query: 472  QTYGKLKDADSPRLI-FNKENSTVVTVFFEYTDIAGSVEAVKGINGRMLKNMHHIAVYYP 296
              YG L     PR        + V  VF EY D+ G+ +A   ++GR       +AV+YP
Sbjct: 296  GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 355

Query: 295  EEEYLNGDY 269
            E ++ + +Y
Sbjct: 356  ENKFSSAEY 364


>sp|Q2QZL4.2|U2A2B_ORYSJ RecName: Full=Splicing factor U2af large subunit B; AltName: Full=U2
            auxiliary factor 65 kDa subunit B; AltName: Full=U2 small
            nuclear ribonucleoprotein auxiliary factor large subunit
            B; Short=U2 snRNP auxiliary factor large subunit B
            gi|108864649|gb|ABA95281.2| transposon protein, putative,
            CACTA, En/Spm sub-class, expressed [Oryza sativa Japonica
            Group] gi|222616418|gb|EEE52550.1| hypothetical protein
            OsJ_34796 [Oryza sativa Japonica Group]
          Length = 548

 Score =  132 bits (331), Expect = 2e-28
 Identities = 69/114 (60%), Positives = 85/114 (74%)
 Frame = -1

Query: 1015 SRHACRVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIV 836
            +RHA RV+VGGLP  AN+QS+A +FN  MA I    A      DAVL++Y+N D  FA V
Sbjct: 210  TRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPG---DAVLNVYINHDKKFAFV 266

Query: 835  EVRSVELASNAMALDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVV 674
            E+RSVE ASNAMALDG++FEG+P+++RRP DYNP LAAALGP+QPS  L L  V
Sbjct: 267  EMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAV 320



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 5/249 (2%)
 Frame = -1

Query: 1000 RVFVGGLPKVANKQSLANFFNLFMARIASIDASRESMYDAVLDIYMNSDMDFAIVEVRSV 821
            R+FVGGLP    +  +      F              +D V D    +   +A    + +
Sbjct: 335  RIFVGGLPYYFTEAQVRELLESFGPLRG---------FDLVKDRETGNSKGYAFCVYQDL 385

Query: 820  ELASNAMA-LDGVVFEGSPLRIRRPNDYNPGLAAALGPTQPSCFLKLEVVPRQALDTLID 644
             +   A A L+G+      L +RR N      AA   P Q S  L+ +            
Sbjct: 386  NVTDIACAALNGIKMGDKTLTVRRANQG----AAQPRPEQESILLQAQ------------ 429

Query: 643  LDTKFGRTLQAQALEARIQHSYQCDILPSRVLCLLNAVLLD-IWDDRD--SLSQYLRSEA 473
                  + +Q Q L       YQ   LP++V+CL   V  D + DD +   + + +R EA
Sbjct: 430  ------QQVQLQKLV------YQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEA 477

Query: 472  QTYGKLKDADSPRLI-FNKENSTVVTVFFEYTDIAGSVEAVKGINGRMLKNMHHIAVYYP 296
              YG L     PR        + V  VF EY D+ G+ +A   ++GR       +AV+YP
Sbjct: 478  GKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYP 537

Query: 295  EEEYLNGDY 269
            E ++ + +Y
Sbjct: 538  ENKFSSAEY 546